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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00043 ATGTTTTGGTCACAGAATCCCATAATCTTCCTAAGCTCACAACATAAGTCAGCCGTTACACAGAGAAAAGAAAAACCAAGAGAAGAAGGAACAACCATGAGGAGAGAAAGAGATGCAGAAGCTGAGTTAAATCTACCACCTGGGTTCCGGTTCCACCCCACTGACGAAGAGCTCGTCGTTCATTACCTATGTCGCAAAGTCAGTTACCAGTGTCTACCCGTTCCGATCATCGCCGAAGTTGATCTCTACAAATTCGATCCATGGCATCTTCCGGAGAAGGCTTTGTTTGGAAAAAAAGAGTGGTACTTCTTCACCCCTCGGGACCGGAAATACCCGAATGGATCGAGACCCAACAGAGCCGCTGGAAGTGGATACTGGAAAGCAACAGGCGCCGATAAACCAATCAAACCGACAGGAAGCGCGAGGCATGTTGGAATAAAGAAGGCGCTGGTCTTTTACTCTGGGAAAGCACCTAAAGGAGTCAAGACTAATTGGATCATGCATGAATATCGACTCGCAGAACCGAATCGGCACTCCAACAAAAAGGGTAGTCTGAGGCTGGATGACTGGGTTCTTTGCAGAATCTACAACAAGAAGAACAATTGGCAGACAATTCGAAACCAAAAGGAAGAACCATCCCTTGAAGAAACTATGGACTCCTCCTTTGAGGCGGTTGAAGACACTGCATCGGACAGTTTAACGACCCCAGAATCAGACGTTGAAAATGATCCACTTATAGAACTGGATAATCAGGCTTTGCCCCGTGGGAATCCATCTCAAGCTCTAGATGTCGTGCAAGCAACACAAACTGATACAAAATGCAGTTTTCAGATGGGGAACTGTCTGAAAGAGGAAGATAATAACGACTGGTTTATGGACTTGAATCTGGATGATTTGCAGAATTCCCTTGTGGCATTTGGAGCGACACCTACACCAGATCTGACTTACCAGGATTACTACTTCTCGGGCCTTTGTTCTCCACGTTTGAAGCCTTACCAGACCAACCTGCCATCCTTGTGGAACTCTTGA 1029 46.26 MFWSQNPIIFLSSQHKSAVTQRKEKPREEGTTMRRERDAEAELNLPPGFRFHPTDEELVVHYLCRKVSYQCLPVPIIAEVDLYKFDPWHLPEKALFGKKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIKPTGSARHVGIKKALVFYSGKAPKGVKTNWIMHEYRLAEPNRHSNKKGSLRLDDWVLCRIYNKKNNWQTIRNQKEEPSLEETMDSSFEAVEDTASDSLTTPESDVENDPLIELDNQALPRGNPSQALDVVQATQTDTKCSFQMGNCLKEEDNNDWFMDLNLDDLQNSLVAFGATPTPDLTYQDYYFSGLCSPRLKPYQTNLPSLWNS 342
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00043 342 MobiDBLite consensus disorder prediction 18 39 - -
Eupl1g00043 342 MobiDBLite consensus disorder prediction 14 39 - -
Eupl1g00043 342 SUPERFAMILY NAC domain 39 198 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Eupl1g00043 342 FunFam NAC transcription factor 54 202 - -
Eupl1g00043 342 Gene3D NAC domain 54 204 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Eupl1g00043 342 Pfam No apical meristem (NAM) protein 46 172 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Eupl1g00043 342 MobiDBLite consensus disorder prediction 207 241 - -
Eupl1g00043 342 ProSiteProfiles NAC domain profile. 45 198 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Eupl1g00043 342 PANTHER NAC TRANSCRIPTION FACTOR 56 41 259 - -
Eupl1g00043 342 MobiDBLite consensus disorder prediction 223 239 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00043 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197798 Eupl Eupl1g00043 Eupl-Chr1:1417178 Eupl6g00857 Eupl-Chr6:13806089
2206731 Eupl Eupl1g00043 Eupl-Chr1:1417178 Eupl1g00047 Eupl-Chr1:1565793
2211158 Eupl Eupl3g00463 Eupl-Chr3:20262827 Eupl1g00043 Eupl-Chr1:1417178
2214358 Eupl Eupl1g00043 Eupl-Chr1:1417178 Eupl11g00797 Eupl-Chr11:10195245
2214394 Eupl Eupl1g00043 Eupl-Chr1:1417178 Eupl4g01119 Eupl-Chr4:17070109
2214725 Eupl Eupl1g00043 Eupl-Chr1:1417178 Eupl5g00079 Eupl-Chr5:1718217
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00383 . 82 239 NAC Transcription Factor family AT3G57150 33.846 4.42e-21 94.7
Eupl11g00127 . 1 138 NAC Transcription Factor family AT5G13180 82.609 6.73e-86 256.0
Eupl11g00890 . 9 113 NAC Transcription Factor family AT1G69490 41.121 5.21e-22 89.7
Eupl11g01329 . 1 314 NAC Transcription Factor family AT3G18400 55.728 5.88e-109 317.0
Eupl11g00797 . 1 336 NAC Transcription Factor family AT5G61430 59.128 2.05e-148 421.0
Eupl11g00750 . 10 274 NAC Transcription Factor family AT1G26870 61.049 6.92e-102 306.0
Eupl2g01296 . 1 256 NAC Transcription Factor family AT1G56010 50.763 9.12e-83 249.0
Eupl1g00043 . 2 192 NAC Transcription Factor family AT5G08790 64.948 9.44e-88 263.0
Eupl1g00047 . 5 357 NAC Transcription Factor family AT3G04070 48.942 1.97e-103 306.0
Eupl1g00050 . 1 336 NAC Transcription Factor family AT5G61430 51.337 3.26e-115 337.0
Eupl6g01038 . 14 178 NAC Transcription Factor family AT1G61110 70.659 4.39e-81 247.0
Eupl6g01036 . 1 238 NAC Transcription Factor family AT4G28500 73.333 3.48e-123 352.0
Eupl6g01016 . 5 266 NAC Transcription Factor family AT5G53950 61.597 6.10e-108 314.0
Eupl6g00857 . 21 364 NAC Transcription Factor family AT3G15510 51.003 1.33e-105 317.0
Eupl6g01645 . 1 274 NAC Transcription Factor family AT1G54330 55.068 1.01e-97 290.0
Eupl13g01157 . 1 327 NAC Transcription Factor family AT2G18060 51.652 3.86e-110 323.0
Eupl2g00992 . 24 146 NAC Transcription Factor family AT1G33060 41.221 7.90e-24 94.0
Eupl4g01515 . 25 246 NAC Transcription Factor family AT1G28470 51.351 8.76e-73 231.0
Eupl3g01201 . 8 170 NAC Transcription Factor family AT3G15500 35.0 2.89e-27 107.0
Eupl4g01994 . 1 240 NAC Transcription Factor family AT3G17730 75.519 2.15e-129 363.0
Eupl4g01993 . 1 491 NAC Transcription Factor family AT1G65910 49.245 6.04e-151 450.0
Eupl2g00105 . 1 258 NAC Transcription Factor family AT3G15500 63.566 1.34e-113 330.0
Eupl2g00106 . 1 363 NAC Transcription Factor family AT3G15510 51.467 3.01e-112 329.0
Eupl9g00259 . 4 339 NAC Transcription Factor family AT5G56620 57.493 5.94e-123 361.0
Eupl3g00566 . 4 185 NAC Transcription Factor family AT1G61110 45.946 1.25e-49 162.0
Eupl2g00593 . 8 202 NAC Transcription Factor family AT3G56570 22.059 3.82e-06 47.4
Eupl4g02166 . 7 150 NAC Transcription Factor family AT3G04070 36.242 6.44e-27 102.0
Eupl8g01051 . 1 242 NAC Transcription Factor family AT4G17980 56.318 9.45e-101 298.0
Eupl1g01546 . 15 186 NAC Transcription Factor family AT1G61110 69.942 9.20e-85 256.0
Eupl1g01408 . 5 560 NAC Transcription Factor family AT5G04410 43.493 4.06e-139 414.0
Eupl13g01918 . 3 341 NAC Transcription Factor family AT4G10350 58.793 3.70e-146 415.0
Eupl3g01793 . 2 178 NAC Transcription Factor family AT1G65910 32.203 1.37e-24 104.0
Eupl5g00085 . 5 335 NAC Transcription Factor family AT5G18270 49.361 6.10e-105 310.0
Eupl5g00080 . 5 358 NAC Transcription Factor family AT3G04070 50.133 2.88e-112 329.0
Eupl5g00079 . 2 268 NAC Transcription Factor family AT5G08790 50.714 2.41e-85 255.0
Eupl5g00101 . 19 109 NAC Transcription Factor family AT3G10490 67.033 3.66e-42 136.0
Eupl13g01345 . 8 221 NAC Transcription Factor family AT5G64060 53.738 1.50e-74 238.0
Eupl13g01347 . 1 340 NAC Transcription Factor family AT5G09330 40.11 8.19e-74 240.0
Eupl13g01307 . 4 178 NAC Transcription Factor family AT1G61110 48.0 4.82e-51 165.0
Eupl4g01119 . 1 336 NAC Transcription Factor family AT5G61430 60.882 3.03e-153 433.0
Eupl4g01120 . 1 244 NAC Transcription Factor family AT1G69490 64.082 2.93e-109 315.0
Eupl4g01136 . 3 199 NAC Transcription Factor family AT3G56570 26.214 4.48e-08 53.5
Eupl4g00532 . 34 228 NAC Transcription Factor family AT4G28500 56.122 2.05e-69 219.0
Eupl4g00198 . 1 251 NAC Transcription Factor family AT5G13180 54.34 9.70e-88 259.0
Eupl6g01502 . 7 275 NAC Transcription Factor family AT2G43000 52.055 1.26e-94 279.0
Eupl1g01157 . 18 292 NAC Transcription Factor family AT5G22290 45.079 1.87e-84 259.0
Eupl1g01180 . 8 234 NAC Transcription Factor family AT5G22380 56.432 9.73e-91 266.0
Eupl14g00858 . 109 395 NAC Transcription Factor family AT1G12260 50.0 5.61e-78 239.0
Eupl10g00977 . 4 338 NAC Transcription Factor family AT5G56620 56.948 4.36e-122 359.0
Eupl8g00124 . 2 364 NAC Transcription Factor family AT2G46770 53.664 8.47e-137 394.0
Eupl8g00060 . 15 334 NAC Transcription Factor family AT1G33060 41.896 2.52e-60 206.0
Eupl8g00056 . 1 288 NAC Transcription Factor family AT4G35580 41.781 1.03e-61 202.0
Eupl8g00055 . 5 279 NAC Transcription Factor family AT4G35580 51.056 2.10e-82 275.0
Eupl8g00054 . 1 482 NAC Transcription Factor family AT4G35580 40.25 1.98e-109 337.0
Eupl13g00382 . 1 364 NAC Transcription Factor family AT2G18060 64.77 3.09e-161 453.0
Eupl13g00420 . 93 503 NAC Transcription Factor family AT4G37130 64.637 0.0 528.0
Eupl13g00616 . 4 157 NAC Transcription Factor family AT3G17730 37.209 8.41e-28 107.0
Eupl13g00753 . 4 274 NAC Transcription Factor family AT2G17040 60.791 2.57e-115 330.0
Eupl13g00825 . 5 266 NAC Transcription Factor family AT1G76420 58.333 7.46e-100 297.0
Eupl14g00023 . 17 541 NAC Transcription Factor family AT1G33060 43.964 2.01e-130 395.0
Eupl14g00063 . 2 255 NAC Transcription Factor family AT2G46770 65.116 1.03e-114 337.0
Eupl5g01411 . 9 225 NAC Transcription Factor family AT3G56570 25.11 3.76e-07 50.4
Eupl5g01099 . 3 234 NAC Transcription Factor family AT5G22380 54.286 4.84e-89 261.0
Eupl5g01076 . 22 273 NAC Transcription Factor family AT5G22290 47.603 7.12e-81 249.0
Eupl5g01536 . 1 173 NAC Transcription Factor family AT1G61110 64.368 1.67e-76 229.0
Eupl7g00707 . 1 177 NAC Transcription Factor family AT4G28530 66.102 9.99e-82 247.0
Eupl5g00511 . 60 149 NAC Transcription Factor family AT1G01720 54.945 1.24e-24 94.0
Eupl5g01834 . 9 144 NAC Transcription Factor family AT5G04410 50.35 2.75e-37 135.0
Eupl3g00188 . 1 515 NAC Transcription Factor family AT3G56570 55.922 0.0 538.0
Eupl3g02484 . 5 257 NAC Transcription Factor family AT1G76420 60.7 5.58e-102 303.0
Eupl3g02367 . 4 274 NAC Transcription Factor family AT2G17040 61.071 7.52e-115 330.0
Eupl3g02081 . 1 364 NAC Transcription Factor family AT2G18060 60.789 3.70e-156 441.0
Eupl9g00891 . 12 316 NAC Transcription Factor family AT2G24430 54.79 8.39e-110 320.0
Eupl11g01612 . 8 234 NAC Transcription Factor family AT5G22380 56.379 3.62e-89 261.0
Eupl5g01707 . 1 564 NAC Transcription Factor family AT5G04410 41.541 7.07e-136 405.0
Eupl13g00910 . 1 543 NAC Transcription Factor family AT1G34190 38.806 4.61e-111 344.0
Eupl3g00032 . 50 379 NAC Transcription Factor family AT2G02450 51.087 1.38e-110 326.0
Eupl2g00753 . 1 305 NAC Transcription Factor family AT4G28500 62.264 3.22e-122 363.0
Eupl6g01552 . 9 371 NAC Transcription Factor family AT1G79580 53.704 2.32e-120 348.0
Eupl3g00463 . 5 289 NAC Transcription Factor family AT1G01720 65.347 8.25e-135 381.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl NAM 3.9e-50 No_clan TF NAC