AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00045 ATGACTTCTGTTTGCCCGTTTGCTAAAGCCGCACCCTCTGCTGATGCCTGTCCAAGGAAGTCTGGAGAAAACAATAACCAACACCAGGTAGAGAATCAGGGCAAGGTTGAAAAGGAGTCTGATGACTCCACCATCATATCTCCCAAGTGCCCATTCGGATATGATTCTCATACATTTAAGTTGGGTCCCCTCAGCTGTGTGATTTGCCAAGCCCTTCTCTTTGAGTGTAGTAAATGTGTGCCTTGTTCCCATAAATATTGCAAAGCATGTATTTCACGCTTCAATGACTGCCCATTATGTGGAGCCGACATAGAGAAGATTGAGCCTGACACAAATCTTCAGGATGTTGTTGATCGCTTCATTGAAGGTCATGCTAGAATCAAGAGGCCTCAAGTTAATACAGATCCAAAGGAAGTAGGAGATGAAACTAAAACTGTGATATATGAGGATGTCTCCTTGGATAGGGGTGCTTTCTTGGTGCAACATGCTATGAGGGCATTTCGTGCCCAGAATATATTGAGTGCAAAATCAAGGCTTAGTCTCTGTGCAGAGGACATCCGTGAGCAGTTAGAAAGACTGGGCAACAACTCAGAGCTGTGTTCACAGCTTGGGGCAGTCCTCGGGATGCTTGGTGACTGCTGTCGAGCAATGGGAGATGCAGGCTCTGCAGTTACTTATTATGAAGAAAGCGTCGAGTTTCTTTCAAAATTTCCTACAGATGATCTGGAGGTGACACACACGCTTTCTGTATCACTCAATAAAATTGGAGATCTTAAATACTATGATGGAGATATGCAAGCTGCAAGATCTTACTATTCTCGATCTTTGGATGTTCGCCGTAATGCCATTAAGGATCATTCAAATGTCTCATCCCAGACTTTAGATGTGTCTGTCTCTCTTGCCAAAGTCGCCGATGTCGACAGGAGTCTAGGCAATGAGGATGTGGCTGTTGATGGATTTCAAGAAGCCATAAAATGCTTGGAGAAATTGACACTGAATCCTAATGAGACTGCTCTCGAAAAACGGCGCCTTTCAGTGCTTGAGTTCCTCCACAGCCAACTTGAAGAGCAGCCCATTTCTTCTGCATGA 1089 44.63 MTSVCPFAKAAPSADACPRKSGENNNQHQVENQGKVEKESDDSTIISPKCPFGYDSHTFKLGPLSCVICQALLFECSKCVPCSHKYCKACISRFNDCPLCGADIEKIEPDTNLQDVVDRFIEGHARIKRPQVNTDPKEVGDETKTVIYEDVSLDRGAFLVQHAMRAFRAQNILSAKSRLSLCAEDIREQLERLGNNSELCSQLGAVLGMLGDCCRAMGDAGSAVTYYEESVEFLSKFPTDDLEVTHTLSVSLNKIGDLKYYDGDMQAARSYYSRSLDVRRNAIKDHSNVSSQTLDVSVSLAKVADVDRSLGNEDVAVDGFQEAIKCLEKLTLNPNETALEKRRLSVLEFLHSQLEEQPISSA 362
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00045 362 SUPERFAMILY TPR-like 198 332 IPR011990 GO:0005515(InterPro)
Eupl1g00045 362 Pfam Tetratricopeptide repeat 207 232 IPR019734 GO:0005515(InterPro)
Eupl1g00045 362 ProSiteProfiles Zinc finger RING-type profile. 66 100 IPR001841 -
Eupl1g00045 362 Gene3D Tetratricopeptide repeat domain 172 342 IPR011990 GO:0005515(InterPro)
Eupl1g00045 362 MobiDBLite consensus disorder prediction 15 42 - -
Eupl1g00045 362 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 62 142 IPR013083 -
Eupl1g00045 362 SUPERFAMILY RING-U-box 65 107 - -
Eupl1g00045 362 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Eupl1g00045 362 SMART tpr-5 204 237 IPR019734 GO:0005515(InterPro)
Eupl1g00045 362 SMART tpr-5 249 282 IPR019734 GO:0005515(InterPro)
Eupl1g00045 362 PANTHER RING FINGER PROTEIN 41, 151 14 356 - GO:0016567(PANTHER)|GO:0061630(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00045 - -