Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl1g00045 | ATGACTTCTGTTTGCCCGTTTGCTAAAGCCGCACCCTCTGCTGATGCCTGTCCAAGGAAGTCTGGAGAAAACAATAACCAACACCAGGTAGAGAATCAGGGCAAGGTTGAAAAGGAGTCTGATGACTCCACCATCATATCTCCCAAGTGCCCATTCGGATATGATTCTCATACATTTAAGTTGGGTCCCCTCAGCTGTGTGATTTGCCAAGCCCTTCTCTTTGAGTGTAGTAAATGTGTGCCTTGTTCCCATAAATATTGCAAAGCATGTATTTCACGCTTCAATGACTGCCCATTATGTGGAGCCGACATAGAGAAGATTGAGCCTGACACAAATCTTCAGGATGTTGTTGATCGCTTCATTGAAGGTCATGCTAGAATCAAGAGGCCTCAAGTTAATACAGATCCAAAGGAAGTAGGAGATGAAACTAAAACTGTGATATATGAGGATGTCTCCTTGGATAGGGGTGCTTTCTTGGTGCAACATGCTATGAGGGCATTTCGTGCCCAGAATATATTGAGTGCAAAATCAAGGCTTAGTCTCTGTGCAGAGGACATCCGTGAGCAGTTAGAAAGACTGGGCAACAACTCAGAGCTGTGTTCACAGCTTGGGGCAGTCCTCGGGATGCTTGGTGACTGCTGTCGAGCAATGGGAGATGCAGGCTCTGCAGTTACTTATTATGAAGAAAGCGTCGAGTTTCTTTCAAAATTTCCTACAGATGATCTGGAGGTGACACACACGCTTTCTGTATCACTCAATAAAATTGGAGATCTTAAATACTATGATGGAGATATGCAAGCTGCAAGATCTTACTATTCTCGATCTTTGGATGTTCGCCGTAATGCCATTAAGGATCATTCAAATGTCTCATCCCAGACTTTAGATGTGTCTGTCTCTCTTGCCAAAGTCGCCGATGTCGACAGGAGTCTAGGCAATGAGGATGTGGCTGTTGATGGATTTCAAGAAGCCATAAAATGCTTGGAGAAATTGACACTGAATCCTAATGAGACTGCTCTCGAAAAACGGCGCCTTTCAGTGCTTGAGTTCCTCCACAGCCAACTTGAAGAGCAGCCCATTTCTTCTGCATGA | 1089 | 44.63 | MTSVCPFAKAAPSADACPRKSGENNNQHQVENQGKVEKESDDSTIISPKCPFGYDSHTFKLGPLSCVICQALLFECSKCVPCSHKYCKACISRFNDCPLCGADIEKIEPDTNLQDVVDRFIEGHARIKRPQVNTDPKEVGDETKTVIYEDVSLDRGAFLVQHAMRAFRAQNILSAKSRLSLCAEDIREQLERLGNNSELCSQLGAVLGMLGDCCRAMGDAGSAVTYYEESVEFLSKFPTDDLEVTHTLSVSLNKIGDLKYYDGDMQAARSYYSRSLDVRRNAIKDHSNVSSQTLDVSVSLAKVADVDRSLGNEDVAVDGFQEAIKCLEKLTLNPNETALEKRRLSVLEFLHSQLEEQPISSA | 362 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl1g00045 | 362 | SUPERFAMILY | TPR-like | 198 | 332 | IPR011990 | GO:0005515(InterPro) | |
| Eupl1g00045 | 362 | Pfam | Tetratricopeptide repeat | 207 | 232 | IPR019734 | GO:0005515(InterPro) | |
| Eupl1g00045 | 362 | ProSiteProfiles | Zinc finger RING-type profile. | 66 | 100 | IPR001841 | - | |
| Eupl1g00045 | 362 | Gene3D | Tetratricopeptide repeat domain | 172 | 342 | IPR011990 | GO:0005515(InterPro) | |
| Eupl1g00045 | 362 | MobiDBLite | consensus disorder prediction | 15 | 42 | - | - | |
| Eupl1g00045 | 362 | Gene3D | Zinc-RING finger domain, C3HC4 (zinc finger) | 62 | 142 | IPR013083 | - | |
| Eupl1g00045 | 362 | SUPERFAMILY | RING-U-box | 65 | 107 | - | - | |
| Eupl1g00045 | 362 | ProSitePatterns | Zinc finger RING-type signature. | 82 | 91 | IPR017907 | - | |
| Eupl1g00045 | 362 | SMART | tpr-5 | 204 | 237 | IPR019734 | GO:0005515(InterPro) | |
| Eupl1g00045 | 362 | SMART | tpr-5 | 249 | 282 | IPR019734 | GO:0005515(InterPro) | |
| Eupl1g00045 | 362 | PANTHER | RING FINGER PROTEIN 41, 151 | 14 | 356 | - | GO:0016567(PANTHER)|GO:0061630(PANTHER) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl1g00045 | - | - |