AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00048 ATGAATTCTTCGATGTTAATGCCTGTGTCAACCAGTAAAGAGAGCTTGGAGATGAAACTCATGAAAGATGAGTACCAAACATGGACAGGAGGTCTACATAAAATACTATGTATGCAAGGAGGAGATGATGACAGTAGCTACGCAAAGAATTCCGAAGCTCCAGCATCAGCAATCACCTTATCAAAGCCTTTACTCATAGCAGCAATTCAATCCATGAAGCTTTTCAAAGGCGAGGAGTCGTTAAGGATAGCAGACTTAGGTTGCGCAACTGGGTACAACACGTTGGCCACGGTTGATTTGGTGGTGGAGAGCTTGAGGAGACGGTATAGCGAAGAGTGTGATTATGAGCCTGAATTCGAGGCCTTCTTCTCTGATCTCCCATCGAACGATTTCAATTCTCTCTTTCGATCATTTCCGCCATTCACAGATAGAAAGAAAAGAAGGTATTATGCGGCCGGTGTGCCGGGATCGTTCTATGACCGTCTCTTCCCTAAGGGCAAGCTTCATGCTGCAGTTAGCTTAAGTGCCTTACACTGGCTTTCTCAGATACCGGAGACGGTGTTGGATAAGAAATCATCGGCTTGGAACAAAGGAAGAGCTTGGATTGATGGAGCGAAGAATGAGGTCGTTGAAGCATATAGGAAGCAATCGATGGAGGATTTGGAAACCTTTTTACGATGTCGAAGGGAGGAGATTCTAGAGGGAGGAATGTTGTTTATATTGATGGCTGGGAGACCAGGTTCGCAGCGGCCGGAAAACCAGTTAGGTGATCCTGACTCAAGAGCTAAGCACCCTTTTACCAGCTCTATGGATCAGGCATGGGAAGACTTATTAAATGAGGGTTTGATCGAGCAAGAGACCAGAGACACATTCAACATACCTGCATACATGAGAAGCACAGATGAGGTTGAGAAGGCTTTTCACCAATGTAGTGGGTTTGAGATCCAAAGACTTGAGTACCAGAGAATCATGGAACATTCAAAGGAGAAGCAAGAGGAATGGATCAAAGATCCGGTTTCCTATGGTAGGGCCAAAGCCAACCTGGTCCGTGCAACACTTAAGCCAATGGTTGAGGCCCACCTTGGTCCCAAGCTCTCTGAGGAGTTGTTCAAGCGATTCGAGAAGAGAGCATCAGGAGACCTAGCCATGCTTCATAGGACATGTTTTTATGGAGTTATTGTTGTGTACGCAATTAGAAAGTAG 1203 45.64 MNSSMLMPVSTSKESLEMKLMKDEYQTWTGGLHKILCMQGGDDDSSYAKNSEAPASAITLSKPLLIAAIQSMKLFKGEESLRIADLGCATGYNTLATVDLVVESLRRRYSEECDYEPEFEAFFSDLPSNDFNSLFRSFPPFTDRKKRRYYAAGVPGSFYDRLFPKGKLHAAVSLSALHWLSQIPETVLDKKSSAWNKGRAWIDGAKNEVVEAYRKQSMEDLETFLRCRREEILEGGMLFILMAGRPGSQRPENQLGDPDSRAKHPFTSSMDQAWEDLLNEGLIEQETRDTFNIPAYMRSTDEVEKAFHQCSGFEIQRLEYQRIMEHSKEKQEEWIKDPVSYGRAKANLVRATLKPMVEAHLGPKLSEELFKRFEKRASGDLAMLHRTCFYGVIVVYAIRK 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00048 400 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 35 385 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Eupl1g00048 400 Gene3D Vaccinia Virus protein VP39 50 324 IPR029063 -
Eupl1g00048 400 Gene3D - 35 379 IPR042086 -
Eupl1g00048 400 Pfam SAM dependent carboxyl methyltransferase 68 398 IPR005299 GO:0008168(InterPro)
Eupl1g00048 400 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 395 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00048 K18886 gibberellin A4 carboxyl methyltransferase [EC:2.1.1.276]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197801 Eupl Eupl1g00048 Eupl-Chr1:1599095 Eupl6g00329 Eupl-Chr6:5074995
2214726 Eupl Eupl1g00048 Eupl-Chr1:1599095 Eupl5g00083 Eupl-Chr5:1792869