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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00053 ATGGCTGAAGTTCTGAGCAAAACCAATCTGTTGTCTCCTTCATGTTCTCCTCATCTCTTCTCCGCTTCTCCCCCCAAGAACTCATCACCGCCTTCCATTACTGGGTTCCCTTCTCTGAAACTCCAACCTCTCAAATCTTCCTCCAATAGCGACTTTCATGGAAGTCAAATCGTTCTCCAACAAGGTGAGAGGGAACCCAAGAGAGGAAATCCCAAAGCTTTGCCAGTCCAGATGAGCCTTTGTATTGGGAAAGCTCAGAAATGGTGGGAGAAGGGGCTTCAACCAAACATGAAAGAGATTACTTCTGCACAAGATCTCGTTGATTCCTTGTCAAACGCAGGAGATAAACTAGTTATTGTGGATTTCTTTTCTCCTGGTTGTGGAGGTTGTAAAGCCCTTCATCCAAAGATCTGTCAATTTGCAGAGATGAACCCAGATGTTCAGTTCCTTCAGGTGAACTACGAGGAGCATAAATCAATGTGTTATAGCCTTAACGTCCATGTTCTCCCCTTCTTCCGGTTTTACAGAGGTGCCCATGGTCGTCTATGCAGCTTCAGCTGCACCAACGCTACTATCAAGAAATTCAAAGATGCACTGGCTAAGCACACCACAGACCGATGCAGCCTTGGACCACCAAAAGGGCTGGAGGAATCAGAGCTCCTCGCTTTGGCTGCAAACAAGGATCTCTCCTTCAACCACACACCAAAGCCAATAGTAGCAAAACCAGTTCCTATCCCTGCACAAGAAGAGAAAGAAGAACCAGCTCCTGCAAACGTAAATATCCCTCTCCCTTCGACCTCCAAAGCCATTAAAGACTCTGAAGAGAAAAGCTTGGTCACAGCTGGGAGATGA 852 46.6 MAEVLSKTNLLSPSCSPHLFSASPPKNSSPPSITGFPSLKLQPLKSSSNSDFHGSQIVLQQGEREPKRGNPKALPVQMSLCIGKAQKWWEKGLQPNMKEITSAQDLVDSLSNAGDKLVIVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTTDRCSLGPPKGLEESELLALAANKDLSFNHTPKPIVAKPVPIPAQEEKEEPAPANVNIPLPSTSKAIKDSEEKSLVTAGR 283
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00053 283 ProSiteProfiles Thioredoxin domain profile. 67 204 IPR013766 -
Eupl1g00053 283 MobiDBLite consensus disorder prediction 245 283 - -
Eupl1g00053 283 MobiDBLite consensus disorder prediction 19 53 - -
Eupl1g00053 283 CDD TRX-family 113 177 - -
Eupl1g00053 283 Gene3D Glutaredoxin 88 202 - -
Eupl1g00053 283 PANTHER THIOREDOXIN, MITOCHONDRIAL 68 250 - GO:0009507(PANTHER)|GO:0045454(PANTHER)
Eupl1g00053 283 MobiDBLite consensus disorder prediction 269 283 - -
Eupl1g00053 283 FunFam Thioredoxin-like 1-2, chloroplastic 86 204 - -
Eupl1g00053 283 SUPERFAMILY Thioredoxin-like 86 202 IPR036249 -
Eupl1g00053 283 Pfam Thioredoxin 112 179 IPR013766 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00053 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2197804 Eupl Eupl1g00053 Eupl-Chr1:1708996 Eupl4g01113 Eupl-Chr4:17008674
2214360 Eupl Eupl1g00053 Eupl-Chr1:1708996 Eupl11g00792 Eupl-Chr11:10164457
2214395 Eupl Eupl1g00053 Eupl-Chr1:1708996 Eupl4g01112 Eupl-Chr4:16996696
2214728 Eupl Eupl1g00053 Eupl-Chr1:1708996 Eupl5g00089 Eupl-Chr5:1926317