AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00057 ATGTTAGTATCACTCCCTCTTTTCCTTCTCTTCTCCTCACTCTTCACCAGCCCTGCATTTGCAGCTAAGTATCTAGATGGATTTCTTTCAAATGGCAACTTTGAACAAGGACCCAAGCCATCCAATCTGAATAAAACAGTCATCATAGGGAAGCACTCACTCCCCAAATGGGAAATCAATGGCATGGTCGAGTACATCTCAGGTGGGCCCCAACCAGGTGGCTTTTTCTTTGCTGTCCCTCGTGGGGTCCACGCTATAAGGCTTGGGAACGAGGCCTCTATCTCCCAGATCATAGCCGTTAAACCTGGATCTATCTACTCCCTCACATTTGGTGCTACCAAAACTTGTGCTCAAGATGAGGTGTTAAAGGTCTCTGTCCCTCCTTTATCAGGAGATCTCTCTCTCCAGACACTCTACAGTAGTGATGGAGGTGACACTTATGCTTGGGCTTTCAAGGCCACTTCAAATGTTGCTAAGGTGATTTTTCACAACCCTGGGATTCAAGAGGATCCTACATGTGGACCTCTCTTGGATGCAGTTGCCATCAAGGAGATCATCCCTCCCTTGCCCACTAGAGGTAACTTGGCTAAGAATGGTGGTTTTGAATATGGTCCTCATTTATTCAAGAACTTTTCCACTGGAGTCCTCCTCCCTCCCAAACAACAAGACCTCATATCCCCACTCCCTGGTTGGATAATCGAATCCCTGAAAGCTGTAAGGTACATAGACTCGAAGCACTTCACCGTCCCCTTCGGACTCGCTGCAGTTGAGCTGGTTGCCGGGAGGGAGAGCGCCATTGCTCAAGTTCTAAGAACAATTCCCAACAAATTCTATAACCTAACCTTCACAATTGGAGATGCGAAGAACGGATGTCATGGATCGATGATGGTCGAGGCTTTCGCGGCGAAAGATACACTGAAAGTTAACTTCATGTCCCATGGGAAGGGTGGGTTCAAGACTGCTAGTTTCAAGTTCAAAGCTATTGCTGCCAGAACAAGAATAACATTTTACAGTGGTTTTTACCACACAAAGCTTCATGACTTTGGCCATCTCTGTGGCCCTGTGTTGGATCAAGTTAGGGTTTTCCCTGTTTCTTAG 1098 46.72 MLVSLPLFLLFSSLFTSPAFAAKYLDGFLSNGNFEQGPKPSNLNKTVIIGKHSLPKWEINGMVEYISGGPQPGGFFFAVPRGVHAIRLGNEASISQIIAVKPGSIYSLTFGATKTCAQDEVLKVSVPPLSGDLSLQTLYSSDGGDTYAWAFKATSNVAKVIFHNPGIQEDPTCGPLLDAVAIKEIIPPLPTRGNLAKNGGFEYGPHLFKNFSTGVLLPPKQQDLISPLPGWIIESLKAVRYIDSKHFTVPFGLAAVELVAGRESAIAQVLRTIPNKFYNLTFTIGDAKNGCHGSMMVEAFAAKDTLKVNFMSHGKGGFKTASFKFKAIAARTRITFYSGFYHTKLHDFGHLCGPVLDQVRVFPVS 365
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00057 365 SUPERFAMILY Galactose-binding domain-like 28 184 IPR008979 -
Eupl1g00057 365 Gene3D - 190 345 - -
Eupl1g00057 365 FunFam DUF642 family protein 190 361 - -
Eupl1g00057 365 PANTHER OS02G0527500 PROTEIN-RELATED 14 362 IPR052437 -
Eupl1g00057 365 Pfam Protein of unknown function (DUF642) 27 183 IPR006946 -
Eupl1g00057 365 Pfam Protein of unknown function (DUF642) 196 361 IPR006946 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00057 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2193705 Eupl Eupl11g00217 Eupl-Chr11:2753694 Eupl1g00057 Eupl-Chr1:1874958
2197806 Eupl Eupl1g00057 Eupl-Chr1:1874958 Eupl5g00558 Eupl-Chr5:22822214
2210418 Eupl Eupl1g00057 Eupl-Chr1:1874958 Eupl4g00302 Eupl-Chr4:4801777