AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00059 ATGGTAATCATCCAAGATCAACTGCAACCTACGAAGGAACTTTACATTGAGGATGTCGGCCCCCGGAAAATAAAAAGTATTAAATTTTCGATGTTTTCCGGAGCTGAAATGAGCAAAGCTGCCGAGGTTCAAGTATGGCGTAGTGGCTTCTATGATTCATCCAGAAAGCCAATTGAAAATGGTTTGCTTGATTCTCATATGGGTCCTATTAACAGCAACAGTATTTGTGCAACATGCCATGGAAAATTTGAAGCATGTCCTGGGCACTTTGGATATTTGAATCTTGTTCTCCCCGTTTTTAATGTTGGATACTTCAGTTCTATTGTGAGAATACTGAAGTGCATCTGTAAGTGTTGTGCTCGAATTCTTCTTACGGAGAAAGATCGTGAAAACTATTTAAAGAAGATGAGAAGTCCCAAAATGGAGGCTTTACAGAAGGATGTGTTAGTGAAGCAAATCATAAAAAAGTGCAAAACTTCTTGTCACCGATGTGGATATATAAATGGTGGGGTGAAAAAGGCAGGATCCATTTTGGGTATTGTTCATGATCGCTCAAAAGTTACTGATTGGACATTGAAGGAATGTAATTCAACAATTTCTCACACAGAAGAGTCCAGGGCATCCTCCAATGTTCATGTTCTTACTCCCGTCAGAATTCTTGCTTTATTTAAAAGAATGCTGGATGAGGATTGTGAACTGCTTTATCTTTATGATAGACCTGAGAAACTCATTATAACAGACATTGCAGTACCACCCGTAGCTATCCGTCCTCCAAATCTTAATGCTGCTGGGAATAATAGCATTGAAGATGACATCACTTGTAGATTAAATAGAATTATTCGAGCAAATGCCAGCCTTCGTCTGGGCGCGCAATGCACAAGCTCCACATCCAAATGTTTGATGGACTGGGAGTTGCTTCAAATTGAGGTTGCGCAGTATATAAATAGCGAGGTATGTGATGTTCCATTAAGTACGCATCCATCCAAGCCTTTGCATGGGTTTGTTCAGCGTCTTAAAGGGAAGCAGGGACGTTTTCGTGGAAATTTATCGGCGAAGCGTGTTAATTATACTGCCAGGACTGTTATTTCACCTGACCCTAATCTGAAAATTACAGAGGTGGCAATTCCCATATTAATGGCTCAGATCTTAACGTATCCTGAACTAGTTTCCCATTTAAATATAGAGAAGTTGAGGCAATGTGTCCGCAATGGCCCTAAAAAATACCCTGGGGCAAATAATATTATATATCCTGATGGTACCCTGATACATTTGATGTATGCTTCCAGGAAACGTGCTGCTGATGAGCTGAAATCCGGTTATATAGTTGAACGCCATTTAGTAGATGGGGACATTGTTCTTTTTAACCGTCAGCCGAGTTTGCATCGGATGTCCATCATGTCTCATAGGGCAAGGGTAATGCCTTGGAGGACCTTGAGATTCAACGAATCTGTCTGCAATCCATACAATGCTGACTTTGATGGTGATGAGATGAATTTGCACGTTCCTCAAACGGAAGAGGCCCGCACAGAGGCTCTTATGCTGATGGGGGTGCAAAATAACTTGTGCACACCAAAAAATGGAGAAATTTTGGTTGCTTCCACTCAAGACTTTCTAACATCTTCCTTTCTCATTACGAGGAAGGATACCTTCTATGATCGTGCGGCTTTTTCCCTTATGTGTTCTTATATGGGGGATGGAATGGATCATGTTGATTTGCCAACGCCAGCCTTAATTAAGCCAATAGAGCTTTGGACTGGTAAACAACTTTTTAGTGTTCTAGTACGCCCAAATGCTCATATGAGGGTCTATTTGAATCTTACTGTTTTTGAGAAAAATTATAGCAAGTTTGAAGAAACAATGTGTCCAAATGATGGGTTTGTCTATTTCCGGAATGGTGAACTTATATCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGCAATAAAGATGGACTTTTCTCTGTTCTTCTTAGAGATTACAATGCACATGCTGCTGCTTCTTGTATGAACCGTCTAGCAAAATTGAGTGCCCGGTGGATTGGGAATCATGGGTTTTCAATTGGGATTGATGATGTCCAACCAGGAGAACTACTGAATCACCAGAAAAAAGCAAGGATTGAGGAAGGTTATGAGGTCTGTGATGAGTTAATAAAGTCATACAACAAGGGAAACCTTAAATTTCAACCAGGTTGTGATGCTGCTCAAACATTGGAAGCAGAGATAACTGGCGTGTTGAATAAAATCCGAGAGAAAACTGCAAAAGTTTGTATGGAAGAATTGAATTGGAGGAATAGCCCTTTGATTATGTCACAGTGTGGATCCAAAGGCTCTCCTATCAATATTAGCCAGATGATTGCATGTGTTGGTCAACAATCAGTTGGGGGTCGCCGTGCTCCTAATGGATTTATAGATCGAAGTCTTCCACACTTCCGTAGAAAATCGAAAACACCTGCTGCTAAAGGCTTTGTCGCTAATTCATTCTACACTGGTTTGACGGCAACTGAGTTTTTCTTTCATACAATGGGAGGGCGTGAAGGTCTTGTGGATACAGCGGTGAAAACAGCTGAGACTGGGTACATGTCTCATAGAATGAGTAAAGCCTTGGAGGACCTGTCCATTCAGTATGATCACACAGTTCGTAATGCTAGTGGAGGGGTAGTTCAATTTCTTTATGGAGATGATGGCATGGATCCAGCAGATATGGAAGGAAAGGGCGGTATTCCCTTAAATTTGGATAGATTGTACTTGAAAATTAAGGCTACATGTCCTGGTAGGGCACATGCAAACTTGTCTCCTTCAGAAGTCTTAAGAAGTGTTAATGAGAGACTCACAAGACATGATATGACCCAAGAGGGTGGTTGCTCTGATGCCTTTAAAAATTCATTATTGGATTTTGTAAAAAAATGCATTACTGCATTAAAGAGCACAAGGAGGGCACTGCAACTGAATGCAAAATATGTTGAGAAGAGTAATTCTGGTTTTCTAGAGAAACTTGCAGCAAATATTTCCGGTATTACTTCCCAACAGCTACAGGTTTTCTTAGAGACCTGCATTAAACGATACCATTTAAAAAGGATTGAAGCTGGAGCTGCAATTGGTGTAATTGGAGCTCAAAGTATAGGAGAACCAGGGACACAAATGACACTAAAAACTTTCCACTTTGCTGGAGTTGCTAGCATGAATGTCACACTTGGGTTTCCTCGCATTTTAGAAATAATAAATGCAACCAAAAAGATCAGTACACCCATTATTACTGCCACACTCGAGTGTAATAATGATGTTAAGTCAGCACGAATAGTGAAAGCCTGTGTTGAGAAAACAGTTCTGGCCGAGGTCGCCAAAAGCATAAAAATTGTATTGACATCAAGACAAGCATCAATTGTTGTTACACTTGACCTGGAAAGGATTCAAGCTCAACATTTGAGGATATCAGCTTACAGCGTAAGACAATCTATTATGCAACATCCTAAAACAAGATTAAAGCTGCAGCATATTGAGATCTTGGATGATAAGAAGTTGAGAATTCTCCCCCCTGAAGCTGATAGGAGTAAGCTTCATTTTGAATTGCACTCTCTCAAAGCCATGCTTCCAAAGGTTATTGTAAAGGGCATTTCAACTGTTGAACGTGCAGTGATTAACATGGATAAGGGAAAATACAATTTGCTTGTAGAAGGAACAAACCTTCAAGAAGTCATGGGTACTCCAGGAGTCGTTGGCTATGAAACAAAGAGTAATCATATCATGGAAGTCCAGGTAACGCTTGGGATTGAAGCTGCAAGAAAGTGTATTATCGATGAAATACAATACACCATGAAAAGTCATGGAATGAGCATAGACATTCGCCACACGATGCTTTTAGCTGATTTAATGACATCTACGGGTGAAGTCCTTGGAATCACGAGATTTGGTATTCAAAAGATGAAAGAAAGTGTGCTGATGCTAGCATCATTTGAGAGGACAGCAGATCACCTTTTCAATGCTTCGGTTAATGGAAGGGATGACAAGATTGAGGGAGTAAGTGAATGCATCATCACAGGCATACCAATCCAGATAGGCACTGGAATACTTAAAGTTAGACAAAGAGTTCAGCAGGTTCCAAAATTGAAGTATGGGCCAGATCCACTTATATCTTAA 4134 40.42 MVIIQDQLQPTKELYIEDVGPRKIKSIKFSMFSGAEMSKAAEVQVWRSGFYDSSRKPIENGLLDSHMGPINSNSICATCHGKFEACPGHFGYLNLVLPVFNVGYFSSIVRILKCICKCCARILLTEKDRENYLKKMRSPKMEALQKDVLVKQIIKKCKTSCHRCGYINGGVKKAGSILGIVHDRSKVTDWTLKECNSTISHTEESRASSNVHVLTPVRILALFKRMLDEDCELLYLYDRPEKLIITDIAVPPVAIRPPNLNAAGNNSIEDDITCRLNRIIRANASLRLGAQCTSSTSKCLMDWELLQIEVAQYINSEVCDVPLSTHPSKPLHGFVQRLKGKQGRFRGNLSAKRVNYTARTVISPDPNLKITEVAIPILMAQILTYPELVSHLNIEKLRQCVRNGPKKYPGANNIIYPDGTLIHLMYASRKRAADELKSGYIVERHLVDGDIVLFNRQPSLHRMSIMSHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHVDLPTPALIKPIELWTGKQLFSVLVRPNAHMRVYLNLTVFEKNYSKFEETMCPNDGFVYFRNGELISGQLGKVTLGNGNKDGLFSVLLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPGELLNHQKKARIEEGYEVCDELIKSYNKGNLKFQPGCDAAQTLEAEITGVLNKIREKTAKVCMEELNWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFRRKSKTPAAKGFVANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSHRMSKALEDLSIQYDHTVRNASGGVVQFLYGDDGMDPADMEGKGGIPLNLDRLYLKIKATCPGRAHANLSPSEVLRSVNERLTRHDMTQEGGCSDAFKNSLLDFVKKCITALKSTRRALQLNAKYVEKSNSGFLEKLAANISGITSQQLQVFLETCIKRYHLKRIEAGAAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGFPRILEIINATKKISTPIITATLECNNDVKSARIVKACVEKTVLAEVAKSIKIVLTSRQASIVVTLDLERIQAQHLRISAYSVRQSIMQHPKTRLKLQHIEILDDKKLRILPPEADRSKLHFELHSLKAMLPKVIVKGISTVERAVINMDKGKYNLLVEGTNLQEVMGTPGVVGYETKSNHIMEVQVTLGIEAARKCIIDEIQYTMKSHGMSIDIRHTMLLADLMTSTGEVLGITRFGIQKMKESVLMLASFERTADHLFNASVNGRDDKIEGVSECIITGIPIQIGTGILKVRQRVQQVPKLKYGPDPLIS 1377
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00059 1377 Gene3D - 1309 1368 - -
Eupl1g00059 1377 FunFam DNA-directed RNA polymerase subunit 1309 1366 - -
Eupl1g00059 1377 FunFam DNA-directed RNA polymerase II subunit RPB1 427 524 - -
Eupl1g00059 1377 Coils Coil 734 754 - -
Eupl1g00059 1377 SMART rpolaneu7 241 545 IPR006592 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 Gene3D - 869 921 - -
Eupl1g00059 1377 Gene3D - 692 809 IPR038120 -
Eupl1g00059 1377 Pfam RNA polymerase Rpb1, domain 4 717 823 IPR007083 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 CDD RNAP-III-RPC1-N 32 880 IPR035697 -
Eupl1g00059 1377 Pfam RNA polymerase Rpb1, domain 2 352 517 IPR000722 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 Gene3D RNA polymerase II, clamp domain 14 145 IPR044893 -
Eupl1g00059 1377 Gene3D RNA polymerase ii 384 444 - -
Eupl1g00059 1377 Gene3D RNA polymerase Rpb1, domain 3 525 691 IPR042102 -
Eupl1g00059 1377 FunFam DNA-directed RNA polymerase subunit 690 809 - -
Eupl1g00059 1377 Pfam RNA polymerase Rpb1, domain 5 830 1311 IPR007081 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 Gene3D - 810 868 - -
Eupl1g00059 1377 PANTHER DNA-DIRECTED RNA POLYMERASE 22 1361 IPR045867 GO:0003899(PANTHER)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 CDD RNAP-III-Rpc1-C 1020 1355 IPR035698 -
Eupl1g00059 1377 Gene3D - 342 524 - -
Eupl1g00059 1377 FunFam DNA-directed RNA polymerase subunit 15 137 - -
Eupl1g00059 1377 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 16 1361 - -
Eupl1g00059 1377 Pfam RNA polymerase Rpb1, domain 3 520 692 IPR007066 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 Pfam RNA polymerase Rpb1, domain 1 22 349 IPR007080 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Eupl1g00059 1377 FunFam DNA-directed RNA polymerase subunit 525 691 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00059 K03018 DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2196081 Eupl Eupl13g00709 Eupl-Chr13:10437668 Eupl1g00059 Eupl-Chr1:1950126
2197807 Eupl Eupl1g00059 Eupl-Chr1:1950126 Eupl5g01430 Eupl-Chr5:37478859
2206734 Eupl Eupl1g00059 Eupl-Chr1:1950126 Eupl1g00063 Eupl-Chr1:2112111