AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00067 ATGCAGAAACCTCAAGCACCGTCGGTTACCACCACCCCGCATCCGGATCCGCCAGAACTTGGCGTATCTCCGGCAGATGCGCCGCCGAAACAGATGGCGCTGGCGATGGACCGACTGGCTCTAGCGGCTCGGCTCATTGCAGACATCAGGCTCGGTGCCGATCGCCTCCTCGAAGCCTTTGTCGTCGTTGCACAACCTCATTACTCCAACAAACCCCTACATCTGATCCTCAATGAGGAGGCTTCAATGCGACAACACCTTCAAGATCTCCGAACTGTCGGTAGGCAACTGGAAGATTCTGGAGTTCTAAACAGATCTCTTCGCTTGCGAAGTAATTCTTGGGGTTTGCACATGCCCCTTGTTTGTCCGGATGGTGCTGTTGTTGCATATGCTTGGAAACGTCAACTTGCTGGCCAGGCTGGTGCATCTGCTGTTGACAGAACCAGGCTAGCTCTAAAGGCATTTACTGATCAGAAGAGGCGATTTTTTCCCCACCTTGAAGATGAACCATCTTCTCAGACTTCTGGTGGGGAATCTGAAATTTCAAAGAAACATCGTGGTCCCCAGGCACCAGCCGTGGATCACAAGTTATGTGAGGACAAAACTTTATTCGATGTTCTATTGCATTTGGAGAAAGAGGCTCCTAACATAAGAATTTTGACTTACCAACGCTCGGACTGGTTAAAAAGAGCTTCTTCCCTGTCGTCTTCATCAGATGAGAATTCTATAGTGTCGTCCGAGGAACATAATTTCCTGAGTTCGAATAATCTAAGAACAGGTTTGCTGGGTGCTGTGGCTGTGGATCAGGTTGCCGTCGTTGAGTTGTTAGTGCCTTCTGTTTTCAGAGCTATAGTATCATTGCATCCAGCTGGCTCTATAGATCCTGATGCAGTGGCATTCTTTTCTCCCATTGAGGGAGGCAGCTATATACATGCAAGAGGTTTTTCAGTTTATCATGTATTTAGACACATCACGGAGCATGCTGTTAAGGCATTGCAGTATTTTATTGGTACCAGAACTGATATGCCATTATATCTTCTTTTGCACTGGGTCTGCAGCTATCAAACTCTATTTACAAAAGTTTGCAGTAAGTGTGGACGGCTATTGACAATGGACAGGTCATCCGCTTTGCTCTTGCCTCCTGTTCATCGATCTTACCGCCATTTTTCTACTACTAAAATCTCATCAACCCAATCAACACCGTTAGCAAAGGACCAGAGCTTAGATCTCACCGTAGCATATCATATTGGGTGCTATTCAGATGGATCCTAG 1272 46.93 MQKPQAPSVTTTPHPDPPELGVSPADAPPKQMALAMDRLALAARLIADIRLGADRLLEAFVVVAQPHYSNKPLHLILNEEASMRQHLQDLRTVGRQLEDSGVLNRSLRLRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEPSSQTSGGESEISKKHRGPQAPAVDHKLCEDKTLFDVLLHLEKEAPNIRILTYQRSDWLKRASSLSSSSDENSIVSSEEHNFLSSNNLRTGLLGAVAVDQVAVVELLVPSVFRAIVSLHPAGSIDPDAVAFFSPIEGGSYIHARGFSVYHVFRHITEHAVKALQYFIGTRTDMPLYLLLHWVCSYQTLFTKVCSKCGRLLTMDRSSALLLPPVHRSYRHFSTTKISSTQSTPLAKDQSLDLTVAYHIGCYSDGS 423
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00067 423 PANTHER 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED 25 419 IPR021627 GO:0003713(PANTHER)|GO:0006357(PANTHER)|GO:0016592(InterPro)|GO:0016592(PANTHER)
Eupl1g00067 423 MobiDBLite consensus disorder prediction 163 192 - -
Eupl1g00067 423 Pfam Mediator complex subunit 27 316 418 IPR021627 GO:0016592(InterPro)
Eupl1g00067 423 MobiDBLite consensus disorder prediction 10 24 - -
Eupl1g00067 423 MobiDBLite consensus disorder prediction 1 28 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00067 K15170 mediator of RNA polymerase II transcription subunit 27
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2214733 Eupl Eupl1g00067 Eupl-Chr1:2256836 Eupl5g00099 Eupl-Chr5:2282266