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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00069 ATGGCAAGTATTGCATGTTTCATCATTGTTAGCAAGAATGATATTCCTATATACGAAGCTGAAGTGGGCTCTGCACTTAAAAAAGAAGAAGCTGCTCACCAGCATCAATTCATATTACACGCAGCTTTGGATATTGTTCAGGACCTTGCATGGACTACAAGTGCTATGTTCTTGAAGGCAATGGACAGATTCAATGATTTGGTGGTGTCGGTATATGTTACTGCAGGTCATATCCTACCATACAGGAATCAATGTATAGATGAACTTATCTATTAA 276 38.41 MASIACFIIVSKNDIPIYEAEVGSALKKEEAAHQHQFILHAALDIVQDLAWTTSAMFLKAMDRFNDLVVSVYVTAGHILPYRNQCIDELIY 91
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00069 91 CDD TRAPPC2-sedlin 4 78 - -
Eupl1g00069 91 Gene3D - 1 79 - -
Eupl1g00069 91 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 1 78 IPR006722 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006888(PANTHER)|GO:0006888(InterPro)|GO:0030008(PANTHER)
Eupl1g00069 91 Pfam Sedlin, N-terminal conserved region 9 78 IPR006722 GO:0006888(InterPro)
Eupl1g00069 91 SUPERFAMILY SNARE-like 1 78 IPR011012 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00069 K20301 trafficking protein particle complex subunit 2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2193086 Eupl Eupl10g00597 Eupl-Chr10:24067270 Eupl1g00069 Eupl-Chr1:2347254