AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl1g00071 | ATGTCTGAGATCAAAGATCCGGCTATTAAACTCTTTGGGAAGACGATATCGTTCCCGGAAAGTCAGATACCGGCGGAGTCTGAAGAGAAATCCGATCTGGACTGTCAGATTACGGAAGACTCAGAAAACATGGATGTGTGCAGGGAAACGACAAAAATTGAAGGTGATGAGCCTCTTGCAGAAGAGCCCATTAAACCAGATAAGTCTTCCACTTTGCATGATGATATGGAAGACAACCATCAATCTCCTACCCAAGAGAACAAAGCAATGGTTGAACCTAAGCATGAGGAAGATCAGGTCGAGACCAATACTGCTGGTCAAGAGAAGGTTCTCAAGAAGCCGGACAAAATCGTCCCATGTCCACGCTGCAACAGCTTAGACACAAAGTTCTGCTACTACAACAATTACAACGTTAACCAACCCAGGCACTTCTGCAAGAATTGCCAGAGATATTGGACAGCTGGGGGAACAATGAGAAACGTTCCTGTGGGTGCTGGACGGCGGAAGAATAAGCACGCGGCCTCACAGTACCGTCACATAATGATGTCCTCTGACGGAATGCCAACCACTAGAGTTGACCCCCCTGATTCCACCAATCACCAAGTTCTCTCATGCGGGGGGTTTTCTGCTCCTTCAAGGCCACCTCTGAAGGGAAACAGTACGGTCCTAAAGTTTGGCACTGACACACCTCTTTGTGAATCCATGGCAACCGTGCTGAATCTTGGAGATCAGAAGCGAAATGTTGAGATTGGTGCTGTGGTGTGTGGAGAAAATGGAGACGAACCCTCCTCATGCGGGTCTTCTGTAACAGCTTCTACTTGCCATGAAAATGAACTGCCCAAAAATGTGGCTAAAATGGAGCAAGGTAGCGTGCCAGTCTGCTGTAACGGACCTAGTCCTCCTACACATCCTATGCAGTGTTATCCTGGTCCTCCATGGCCTTACCCTTGGAATTCAGGTTGGAACAATGTAGCTGCTATGGCAGCAGGTCGCTGCTCTTCAGAGATGGTGTATGGAGCAGATAATGGTAATTCCAATCCGGTCCAGTGGGGCCCCCCATCGATGGTGGCAGCTCCTGCCTTTTGCCCACCAAGCATCCCTTTCCCATTTATGCCTGCCTCCTATTGGGGTTGCATGCCTAGCTGGGCTGGCGGTGCATGGAATATGCCATGGGTTGGATCTAACGGCAGTGTATCCCCGTCGTCCTCCACTAGCAATAGTGGCTGTTCAGGCAATGGCTCTCCAACCTTAGGCAAGCATTCCAGAGATGCAAATTTACAGGGGGAAGAGAAACCAGAAAAGTGTCTTTGGGTTCCGAAGACGCTGAGAATAGATGATCCAGATGAGGCTGCAAAGAGTTCTATCTGGGCTACTCTCGGTATTAAGCCCGATCAGAATGAACCCATAACAAAAGGTGGTATTTTCAAAGCTTTCCAGCCCAAGACAGAAGGCAAGGATCATGCGTCAGATGCCACACAGGTCTTACAAGCAAACCCGGCAGCTTTTTCTCGCTCACAGTCATTCCAAGAGAGCACGTAA | 1539 | 49.06 | MSEIKDPAIKLFGKTISFPESQIPAESEEKSDLDCQITEDSENMDVCRETTKIEGDEPLAEEPIKPDKSSTLHDDMEDNHQSPTQENKAMVEPKHEEDQVETNTAGQEKVLKKPDKIVPCPRCNSLDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHAASQYRHIMMSSDGMPTTRVDPPDSTNHQVLSCGGFSAPSRPPLKGNSTVLKFGTDTPLCESMATVLNLGDQKRNVEIGAVVCGENGDEPSSCGSSVTASTCHENELPKNVAKMEQGSVPVCCNGPSPPTHPMQCYPGPPWPYPWNSGWNNVAAMAAGRCSSEMVYGADNGNSNPVQWGPPSMVAAPAFCPPSIPFPFMPASYWGCMPSWAGGAWNMPWVGSNGSVSPSSSTSNSGCSGNGSPTLGKHSRDANLQGEEKPEKCLWVPKTLRIDDPDEAAKSSIWATLGIKPDQNEPITKGGIFKAFQPKTEGKDHASDATQVLQANPAAFSRSQSFQEST | 512 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl1g00071 | 512 | MobiDBLite | consensus disorder prediction | 1 | 110 | - | - | |
| Eupl1g00071 | 512 | ProSitePatterns | Zinc finger Dof-type signature. | 120 | 156 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Eupl1g00071 | 512 | Pfam | Dof domain, zinc finger | 116 | 172 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Eupl1g00071 | 512 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
| Eupl1g00071 | 512 | PANTHER | CYCLIC DOF FACTOR 2 | 1 | 512 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Eupl1g00071 | 512 | MobiDBLite | consensus disorder prediction | 395 | 432 | - | - | |
| Eupl1g00071 | 512 | MobiDBLite | consensus disorder prediction | 395 | 421 | - | - | |
| Eupl1g00071 | 512 | ProSiteProfiles | Zinc finger Dof-type profile. | 118 | 172 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Eupl1g00071 | 512 | MobiDBLite | consensus disorder prediction | 25 | 82 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl1g00071 | K16222 | Dof zinc finger protein DOF5.5 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr1:2399160 | Eupl4g01093 | Eupl-Chr4:16740197 | dispersed | |
| Eupl | Eupl-Chr2:11511711 | Eupl1g00071 | Eupl-Chr1:2399160 | transposed | |
| Eupl | Eupl-Chr1:2399160 | Eupl11g00778 | Eupl-Chr11:9996879 | wgd | |
| Eupl | Eupl-Chr1:2399160 | Eupl5g00108 | Eupl-Chr5:2460325 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Eupl11g00778 | . | 3 | 457 | C2C2-Dof Transcription Factor family | AT5G39660 | 43.487 | 3.71e-111 | 335.0 | |
| Eupl11g00492 | . | 47 | 127 | C2C2-Dof Transcription Factor family | AT5G60200 | 70.37 | 3.14e-36 | 129.0 | |
| Eupl6g00990 | . | 27 | 311 | C2C2-Dof Transcription Factor family | AT1G28310 | 36.76 | 1.88e-40 | 142.0 | |
| Eupl6g00989 | . | 49 | 124 | C2C2-Dof Transcription Factor family | AT5G60200 | 68.421 | 1.16e-35 | 126.0 | |
| Eupl6g00880 | . | 42 | 150 | C2C2-Dof Transcription Factor family | AT5G60200 | 48.739 | 3.66e-30 | 112.0 | |
| Eupl4g01370 | . | 195 | 307 | C2C2-Dof Transcription Factor family | AT5G60850 | 36.09 | 2.53e-11 | 60.1 | |
| Eupl2g00094 | . | 51 | 132 | C2C2-Dof Transcription Factor family | AT5G60850 | 62.195 | 3.87e-31 | 115.0 | |
| Eupl3g01705 | . | 1 | 253 | C2C2-Dof Transcription Factor family | AT3G50410 | 44.269 | 3.84e-46 | 151.0 | |
| Eupl3g01691 | . | 8 | 96 | C2C2-Dof Transcription Factor family | AT5G65590 | 66.292 | 3.52e-37 | 134.0 | |
| Eupl1g00071 | . | 1 | 457 | C2C2-Dof Transcription Factor family | AT5G39660 | 37.876 | 9.50e-86 | 270.0 | |
| Eupl5g00108 | . | 1 | 457 | C2C2-Dof Transcription Factor family | AT5G39660 | 40.18 | 4.54e-87 | 273.0 | |
| Eupl13g01395 | . | 19 | 247 | C2C2-Dof Transcription Factor family | AT3G52440 | 39.552 | 2.56e-42 | 144.0 | |
| Eupl4g01093 | . | 3 | 457 | C2C2-Dof Transcription Factor family | AT5G39660 | 44.038 | 1.04e-108 | 329.0 | |
| Eupl4g00688 | . | 1 | 372 | C2C2-Dof Transcription Factor family | AT5G62940 | 41.867 | 7.22e-51 | 170.0 | |
| Eupl8g00207 | . | 1 | 341 | C2C2-Dof Transcription Factor family | AT4G24060 | 45.402 | 1.07e-65 | 207.0 | |
| Eupl13g00413 | . | 8 | 96 | C2C2-Dof Transcription Factor family | AT5G65590 | 64.045 | 7.33e-35 | 127.0 | |
| Eupl13g00422 | . | 1 | 253 | C2C2-Dof Transcription Factor family | AT3G50410 | 45.85 | 5.09e-52 | 166.0 | |
| Eupl13g00481 | . | 41 | 201 | C2C2-Dof Transcription Factor family | AT5G65590 | 45.509 | 4.47e-36 | 125.0 | |
| Eupl3g01601 | . | 49 | 112 | C2C2-Dof Transcription Factor family | AT5G60200 | 79.688 | 4.44e-36 | 124.0 | |
| Eupl10g01053 | . | 18 | 158 | C2C2-Dof Transcription Factor family | AT1G51700 | 54.305 | 4.06e-40 | 134.0 | |
| Eupl9g00346 | . | 18 | 177 | C2C2-Dof Transcription Factor family | AT1G51700 | 55.03 | 7.07e-48 | 154.0 | |
| Eupl14g00115 | . | 1 | 341 | C2C2-Dof Transcription Factor family | AT4G24060 | 44.058 | 1.18e-64 | 204.0 | |
| Eupl5g01285 | . | 1 | 321 | C2C2-Dof Transcription Factor family | AT3G55370 | 43.562 | 2.10e-66 | 209.0 | |
| Eupl5g01012 | . | 13 | 243 | C2C2-Dof Transcription Factor family | AT3G52440 | 36.093 | 1.09e-41 | 143.0 | |
| Eupl2g00022 | . | 27 | 311 | C2C2-Dof Transcription Factor family | AT1G28310 | 36.77 | 2.27e-38 | 134.0 | |
| Eupl2g00873 | . | 4 | 175 | C2C2-Dof Transcription Factor family | AT1G29160 | 47.701 | 3.65e-45 | 145.0 | |
| Eupl1g01757 | . | 1 | 321 | C2C2-Dof Transcription Factor family | AT3G55370 | 42.34 | 1.06e-64 | 205.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Eupl | Zn_ribbon_Dof | 1.1e-32 | CL0167 | TF | C2C2-Dof |