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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00082 ATGACAAGTTTAGATGAAGGTAAAGGAGATAGGTTTCTGAAATTGGGTGGGAAGAAATTGCCAGATTTTGATGATTATTTGAACGTTGCGGATGCGACGAAATGCAAAGAGAGATGTGTGAAAAATTGCTCATGTGTGGCGTATGCTTATGTTAGCGGAATCAGGTGTATGGTGTGGGGCAGAGAGCTAATCGATGTTCGGCAGTTCCCTTCGGGTGGGGAAGAGCTTTTCCTCTGTCTTGCTTCTGACCTTGGTGGAAGTGTTGGGTCTACTTTGCAGTTGATATTAGGTTATATTATCTACGCAGTAGTAGTAGTAGGAACGTAG 327 43.43 MTSLDEGKGDRFLKLGGKKLPDFDDYLNVADATKCKERCVKNCSCVAYAYVSGIRCMVWGRELIDVRQFPSGGEELFLCLASDLGGSVGSTLQLILGYIIYAVVVVGT 108
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00082 108 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 87 - -
Eupl1g00082 108 Pfam PAN-like domain 8 66 IPR003609 -
Eupl1g00082 108 SMART ntp-6 7 80 IPR003609 -
Eupl1g00082 108 SUPERFAMILY Hairpin loop containing domain-like 10 65 - -
Eupl1g00082 108 CDD PAN-AP-plant 6 81 - -
Eupl1g00082 108 ProSiteProfiles PAN-Apple domain profile. 7 81 IPR003609 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00082 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:2756241 Eupl6g00694 Eupl-Chr6:11028068 dispersed
Eupl Eupl-Chr1:2744483 Eupl1g00082 Eupl-Chr1:2756241 tandem