AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00083 ATGGCGAAGGAAGAGGTAAAGTTGTTTGGGACATGGTCAAGCCCTTTCAGTCTGAGAATCGTTTGGGCATTGAAGCTGAAGGGAGTCGAATACGAATTCGTCCAAGAAGATCTTTCTAACAAGAGCGATCTGCTTCTCCAATATAATCCTATTTATAAGAAGATTCCGGTGCTTGTTCACAATGGAAAACCGATCGTTGAATCGCTCGTCATCCTCGAATACATCGAGGAGACCTGGAAACAAAATCCATTATTGCCAGTAGATCCTCATGAGAGAGCTGTGACGCGTTTCTGGGCCAAATTTGGAGACGATAAGGTTCTGCCTTCGCTTTGGGGTGCTTTTATCAAACAAGGGAAGGAACAAGAGGAAGCTATTGTTGCAGCCATGGAGAACCTAAGAAACTTGGAAGAAGAGCTCAAGGGTAAGCCATTTTTCGGCGGAGAGGTGATAGGACTCACTGATATTGTCCTCGGCTGGATCGCGAATGTGGTCGGTGCTTTTGAAGAGGTTACTGCTGTGAAGATGGTTGATGAAGAGAGATTTCCATTTTTTTCAGCATGGATTGAGAATTTGTCCAATTTTCCGACCATTGCAGACAACTCGCCTCCTCGAGATAAAGTAGTTTCCAAGTTCCGTGATATCCGTGAAAAACTAATCGTGTCGGCAACGACTAAATGA 678 44.54 MAKEEVKLFGTWSSPFSLRIVWALKLKGVEYEFVQEDLSNKSDLLLQYNPIYKKIPVLVHNGKPIVESLVILEYIEETWKQNPLLPVDPHERAVTRFWAKFGDDKVLPSLWGAFIKQGKEQEEAIVAAMENLRNLEEELKGKPFFGGEVIGLTDIVLGWIANVVGAFEEVTAVKMVDEERFPFFSAWIENLSNFPTIADNSPPRDKVVSKFRDIREKLIVSATTK 225
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00083 225 SFLD Main.3: Omega- and Tau-like 1 221 IPR045073 -
Eupl1g00083 225 Coils Coil 118 138 - -
Eupl1g00083 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 211 IPR010987 -
Eupl1g00083 225 FunFam Tau class glutathione S-transferase 85 221 - -
Eupl1g00083 225 Pfam Glutathione S-transferase, N-terminal domain 5 77 IPR004045 -
Eupl1g00083 225 FunFam Tau class glutathione S-transferase 1 87 - -
Eupl1g00083 225 Gene3D Glutaredoxin 1 84 - -
Eupl1g00083 225 CDD GST-C-Tau 89 214 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Eupl1g00083 225 Gene3D - 85 222 - -
Eupl1g00083 225 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 5 212 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Eupl1g00083 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Eupl1g00083 225 Pfam Glutathione S-transferase, C-terminal domain 117 193 IPR004046 -
Eupl1g00083 225 CDD GST-N-Tau 6 79 - -
Eupl1g00083 225 SFLD Main (cytGST) 1 221 - -
Eupl1g00083 225 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Eupl1g00083 225 SUPERFAMILY Thioredoxin-like 6 106 IPR036249 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00083 K00799 glutathione S-transferase [EC:2.5.1.18]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:13655966 Eupl1g00083 Eupl-Chr1:2777424 dispersed
Eupl Eupl-Chr13:596506 Eupl1g00083 Eupl-Chr1:2777424 dispersed
Eupl Eupl-Chr1:2777424 Eupl3g00243 Eupl-Chr3:7708673 dispersed
Eupl Eupl-Chr3:28797792 Eupl1g00083 Eupl-Chr1:2777424 transposed
Eupl Eupl-Chr12:7213687 Eupl1g00083 Eupl-Chr1:2777424 transposed
Eupl Eupl-Chr1:2777424 Eupl5g00120 Eupl-Chr5:2959236 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g01188 . 108 211 Glutathione S-transferase gene family AT3G09270 37.5 9.94e-19 81.3
Eupl11g00751 . 152 224 Glutathione S-transferase gene family AT1G59670 35.616 3.67e-09 50.1
Eupl11g00645 . 128 227 Glutathione S-transferase gene family AT1G10370 56.0 8.02e-34 114.0
Eupl11g00644 . 2 224 Glutathione S-transferase gene family AT1G10370 65.471 1.06e-104 303.0
Eupl2g01108 . 1 201 Glutathione S-transferase gene family AT1G78380 66.169 4.09e-105 300.0
Eupl2g01217 . 1 214 Glutathione S-transferase gene family AT1G78380 55.556 6.11e-87 254.0
Eupl2g01216 . 1 219 Glutathione S-transferase gene family AT1G17180 65.297 7.61e-111 315.0
Eupl2g01215 . 1 200 Glutathione S-transferase gene family AT1G78380 64.356 1.49e-101 291.0
Eupl2g01214 . 1 215 Glutathione S-transferase gene family AT1G78380 65.116 4.85e-112 318.0
Eupl10g00071 . 24 102 Glutathione S-transferase gene family AT1G77290 66.25 2.99e-34 117.0
Eupl4g01991 . 25 219 Glutathione S-transferase gene family AT1G17180 60.714 1.65e-77 231.0
Eupl4g01990 . 3 214 Glutathione S-transferase gene family AT1G78380 63.551 2.00e-94 273.0
Eupl9g00296 . 3 228 Glutathione S-transferase gene family AT1G74590 44.298 2.05e-64 197.0
Eupl3g00520 . 1 266 Glutathione S-transferase gene family AT1G77290 69.663 3.34e-142 398.0
Eupl3g00790 . 7 224 Glutathione S-transferase gene family AT2G29490 52.055 6.69e-76 227.0
Eupl5g00794 . 99 210 Glutathione S-transferase gene family AT3G09270 36.607 8.64e-18 73.9
Eupl2g00503 . 269 395 Glutathione S-transferase gene family AT5G41240 27.559 5.97e-06 47.0
Eupl1g01637 . 12 235 Glutathione S-transferase gene family AT5G02790 69.643 8.40e-116 330.0
Eupl1g01638 . 9 234 Glutathione S-transferase gene family AT5G02790 63.274 7.97e-106 304.0
Eupl1g01639 . 1 234 Glutathione S-transferase gene family AT5G02790 64.103 2.37e-108 310.0
Eupl1g01689 . 1 213 Glutathione S-transferase gene family AT1G75270 75.117 8.97e-114 322.0
Eupl12g00354 . 5 211 Glutathione S-transferase gene family AT3G09270 51.442 6.21e-68 206.0
Eupl12g00355 . 9 222 Glutathione S-transferase gene family AT2G29420 47.907 1.25e-67 206.0
Eupl1g00083 . 8 227 Glutathione S-transferase gene family AT2G29420 49.545 5.52e-70 212.0
Eupl5g00120 . 6 217 Glutathione S-transferase gene family AT2G29420 45.622 8.56e-68 206.0
Eupl4g01811 . 11 257 Glutathione S-transferase gene family AT5G16710 65.462 6.86e-128 362.0
Eupl4g01063 . 1 135 Glutathione S-transferase gene family AT3G09270 57.778 1.17e-48 154.0
Eupl4g01064 . 91 224 Glutathione S-transferase gene family AT1G74590 39.416 6.98e-21 86.3
Eupl6g01381 . 1 216 Glutathione S-transferase gene family AT1G78380 39.209 1.66e-60 190.0
Eupl6g01382 . 268 465 Glutathione S-transferase gene family AT5G41240 24.528 6.57e-07 48.9
Eupl6g01386 . 1 219 Glutathione S-transferase gene family AT1G17180 55.469 2.62e-98 285.0
Eupl6g01503 . 50 190 Glutathione S-transferase gene family AT2G30860 65.957 5.84e-66 205.0
Eupl4g01711 . 24 102 Glutathione S-transferase gene family AT1G77290 56.25 1.95e-24 90.9
Eupl12g00212 . 8 220 Glutathione S-transferase gene family AT2G29420 44.651 3.93e-65 199.0
Eupl1g00605 . 9 220 Glutathione S-transferase gene family AT2G29420 48.585 6.04e-71 214.0
Eupl3g00513 . 1 266 Glutathione S-transferase gene family AT1G77290 69.663 5.53e-142 397.0
Eupl14g00761 . 3 216 Glutathione S-transferase gene family AT2G02390 54.673 1.22e-81 241.0
Eupl13g00038 . 1 227 Glutathione S-transferase gene family AT1G10370 59.031 4.68e-96 278.0
Eupl9g01407 . 268 465 Glutathione S-transferase gene family AT5G41240 25.0 2.97e-07 50.1
Eupl9g00303 . 3 177 Glutathione S-transferase gene family AT5G62480 51.397 7.83e-54 169.0
Eupl14g00465 . 2 245 Glutathione S-transferase gene family AT5G41210 67.871 1.22e-126 357.0
Eupl5g01425 . 12 235 Glutathione S-transferase gene family AT5G02790 67.857 3.01e-111 320.0
Eupl5g01372 . 1 213 Glutathione S-transferase gene family AT1G75270 72.3 9.58e-114 322.0
Eupl3g00242 . 121 224 Glutathione S-transferase gene family AT3G09270 40.984 2.97e-23 89.7
Eupl3g00243 . 5 224 Glutathione S-transferase gene family AT3G09270 59.091 1.42e-96 279.0
Eupl3g02308 . 2 214 Glutathione S-transferase gene family AT2G30860 48.372 5.43e-68 206.0
Eupl3g00041 . 6 215 Glutathione S-transferase gene family AT2G02390 63.81 2.68e-97 281.0