AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00089 ATGACATCGAGGACTTTGAGGAGAAGGCTCCATCATGGGGATGTCGATGGGAAAAAGCATGAGCAATTGGAGAAATCGGAAATGGATGACTTGAATGAACCTTTACTAGGGAATTGTGAGTATGATCATAGGCGCTCAGAGGGATACACTCTAGAAGATCTCTGGGACGTTGAACATAAAAAGGAACAGATCCATTGGACCTTTCTTTTCTCCCACTTTATAGCTCAATGGGCACAGTGGTTAGCAAATATTGTCCTTGGGTCTGGATCACTTCTTGGAAGGCTGTTGCCTCTTCCTGCTCCCAATCATAAAGGACAAGACAAGAAAATCATTCCAGTTTCTCTCAGTCCTTTACAGGAAGAAACACTGAGAAATATACAGCAAAGGTTGGAAGTCCCCTTTGATGGTACCTGTGTGGAACATCAAGATGCACTCAAGCAACTATGGAGGCTGGCTTATCCTGGTAGAGAACTCCCATCTCTTAAATCAGAACTTTGGAAGGAAATGGGTTGGCAAGGTTCTGACCCTTCAACAGATTTTAGGGGTGGTGGGTTTATATCATTGGAGAATCTTATCTTTTTTGCAAAAAAGTATCCGGAATCATTCCAGAGACTACTGCACAAACAGGAAGGCATAAGAGCAGAGTGGGAGTATCCTTTTGCTGTAGCTGGCATCAATATATCCTTTATGCTGGTTCAAATGTTGGATTTGCAATCAGGCAAGCCTACTTCTATGACAGGAATCCGATTCCTAGAATTGCTTAGGGAAGATGAAATGGCATTTGATAACCTGTACTGTGTAGCATTTCAGATGATGGATGCTCAGTGGCTTGCGAAACGAGCTTCTTATATGGAATTCAATGAAGTTCTGAAGTCTACAAGGATACAGTTAGAACGCGAGCTTGTTCTTGAAGATGTCTCCAGTGTGAAAGATTTGCCAGCATACAACCTGTTGAACAGATAG 963 42.58 MTSRTLRRRLHHGDVDGKKHEQLEKSEMDDLNEPLLGNCEYDHRRSEGYTLEDLWDVEHKKEQIHWTFLFSHFIAQWAQWLANIVLGSGSLLGRLLPLPAPNHKGQDKKIIPVSLSPLQEETLRNIQQRLEVPFDGTCVEHQDALKQLWRLAYPGRELPSLKSELWKEMGWQGSDPSTDFRGGGFISLENLIFFAKKYPESFQRLLHKQEGIRAEWEYPFAVAGINISFMLVQMLDLQSGKPTSMTGIRFLELLREDEMAFDNLYCVAFQMMDAQWLAKRASYMEFNEVLKSTRIQLERELVLEDVSSVKDLPAYNLLNR 320
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00089 320 ProSiteProfiles ELMO domain profile. 140 301 IPR006816 -
Eupl1g00089 320 Pfam ELMO-CED-12 family 125 290 IPR006816 -
Eupl1g00089 320 PANTHER ENGULFMENT AND CELL MOTILITY 107 318 IPR050868 -
Eupl1g00089 320 MobiDBLite consensus disorder prediction 1 29 - -
Eupl1g00089 320 MobiDBLite consensus disorder prediction 7 29 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00089 K23538 ELMO domain-containing protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:2894815 Eupl6g00865 Eupl-Chr6:13990800 dispersed
Eupl Eupl-Chr1:2894815 Eupl5g00132 Eupl-Chr5:3380455 wgd