AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00092 ATGAAACCCTCGTTCACCCACACCGCAAAACCTCCTCTCTGTGCCACATCAATGTCATTCTCAACGGGACTCCGTTTCACTGCCTCTTCTCTCGTCCGTTACCGACTCTCATTCCCCCTCGCTTCGAACTCTTTCGGCGTCTCGAGATATCGCCATGGCTTTTCGGAACTCCGTTTCCTCTCTAACGCCCCTCCTCGATCTCTGCGAGCTGTAAGAGCCAAACGGAGAGAAGAGCCGGCGGGAGAGGAGGCAGGAGACGGGAACGGGAGCTTGCTTGTGAAGGAGAGGGATGTTAAAGAAGGAAGGATTGTTCCTACAGAACTTCACAAGGAGGCAACTGAAGCATACATGGCGTACGCCATGTCAGTATTGCTCGGCCGAGCGTTGCCGGATGTTCGTGACGGATTAAAGCCGGTGCATCGTCGAATCCTATTTGCGATGCATGAATTGGGCCTTTCATCTCGAAAACCACACAAGAAATGTGCTAGAGTTGTTGGGGAGGTCCTAGGTAAATTTCATCCACATGGAGACACTGCTGTATATGATTCTTTGGTGCGAATGGCACAGGATTTCTCTTTGCGCTGTCCACTCATTCGAGGGCATGGAAATTTTGGGTCAATTGATGCAGATCCTCCTGCTGCAATGCGTTACACAGAGTGCAGACTGGAAGCACTTACAGAAGCGATGCTCTTGGCAGATCTAGAACTAGACACGGTTGATTTTGTTCCAAATTTTGATAATTCACAAAAAGAACCGTCACTTCTACCTGCTCGGATCCCAACTCTCTTGTTGAATGGTTCTTCTGGGATTGCGGTGGGAATGGCAACCAACATTCCTCCACACAATCTTGGAGAGTTGGTGGATGCACTCTCTGTGTTGATTCATAATCCAGAAGCTACGCTCCAAGAATTGTTAGAATACATGCCGGGACCTGACTTCCCAACCGGAGGAATAATCATGGGTAACATTGGTATCTTAGAAGCATATCGAGCTGGACGTGGGCGTATAATAGTCAGAGGAAAGACTGATGTTGAATTGCTCGATTCTAAAACCAAACGCACTGCAGTTATTATTAAAGAGATCCCTTATCAGACCAATAAATCTGCACTAGTGGAGAAGATTGCCGAACTTGTGGAAAATAAGAGCTTAGAAGGCATAAGTGATATTCGTGACGAGAGTGATCGTTCTGGAATGCGCATAGTCATAGAGCTAAAAAGGGGATCAGATCCGTCCATTGTTCTCAATAATATGTATCGCCTTACTGCTCTCCAGTCTAGCTTTAGCTGCAACATGGTGGGTATTCTTGATGGGCAACCAAAACTAATGGGTTTGAAGGAGTTGCTTCAGGCATTCCTAGACTTTAGGTGCTCTGTTATTGAAAGACGTGCAAGGTTTAAGCTTTCACAAGCTCAAGAAAGAAAACATATTGTGGAGGGTATCATAGTGGGGCTTGACAATGTGGATGGTGTGATTCGCATAATTAGGGAAAGTTCAAGTAATGCAATGGCTTCAGCAGCTTTGAGGAACGAGTATGATTTATCTGAGAAACAAGCTGAAGCTTTGTTGGACATGACCCTGAGAAAGCTTACTCTTCTTGAGAGTAAAAAGTTTGTTGATGAAAGTAAAAGCTTGGCAGGACAAATTTCTAAGTTAAATGAACTCTTGTCGAGCAAAAAACAAATATTCCAGTTGATAGAACAAGAAGCAAATGAGCTAAAGACCAAATTTTCAACTCCAAGGCGTTCAATGTTAGAAGACTCTGATAGTGGTCAATTAGATGAAATTGATGTTATCCCAAATGACGAAATGCTTCTGGCTGTTAGTGAAAAAGGCTACCTTAAGCGGATGAAGCCAAACACTTTTAATCTTCAACATCGTGGTACGATTGGAAAATCTGTTGGGAAAATGAGAGTAAATGATGCCATGTCTGATTTCCTTGTTTGCCATGCCCATGACCATGTCCTTTACTTCAGTGATAAGGGAATAGTGTACTCATCTCGGGCCTATAAAATTCCAGAATGCACCCGGACTGCTGCTGGCACACCTCTTGTCCAGATATTATCTGTATCTGATGGGGAGAGAATAACTTCAATCATTCCCGTCAGTGAGTTTTCTGGAGATCAGTATCTAGTAATGCTTACGGTGAATGGGTACATCAAGAAAGTGTCTATGAACTTTTTCTCATCAATCAGGACAACAGGAATCATAGCAATTCAGCTGGTTCCTGGTGATGAACTAAAATGGGTCCGGTGTTGCACGAATGATGACCTTGTTGCAATGGCTTCTCAGAATGGAATGGTTATTCTGAGTTCCTGTGAGACTCTTCGAACACTTGGAAGAAATACTCGAGGGTCAGTTGCCATGAGACTGAAAACAGGGGACAAGATGGCATGCATGGACATAATACCAGCAGCTGACTTGCAGAGGGCATCAGAAAACCCTCAAAGCCAGGGTAAGGATCTTGGTGCCCCTTGGCTACTATTTGTGTCTGAAAGTGGTCTAGGAAAGCGGGTCCCTCTGAGCAGCTTCCGCAGGTCTCCTCTGAATAGAGTTGGTTTAAAAGGTTACAAGCTTTCGCCGGAGGACCGCCTAGCTGCAGTATTTGTGGTCGGGTTTTCATTGGCAGAAGATGGTGAAAGTGATGAACAAGTTGTTCTGGTAAGCCAAAGTGGGACAGTCAACAGAATCAAAGTTCGGGATGTTTCTATACAGTCACGCTATGCAAGGGGAGTTATTCTGATGAGGCTGGAGCATGCTGGAAAGATCCAGTCAGCTTCTTTGATCTCGGCAACAGAAGAGGAAGTTGATACCGAGAAAGTTGAGGCCAATGTTGAACTTCACACCGAGAAATCTGCCACACAGTAA 2865 44.96 MKPSFTHTAKPPLCATSMSFSTGLRFTASSLVRYRLSFPLASNSFGVSRYRHGFSELRFLSNAPPRSLRAVRAKRREEPAGEEAGDGNGSLLVKERDVKEGRIVPTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPHKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRCPLIRGHGNFGSIDADPPAAMRYTECRLEALTEAMLLADLELDTVDFVPNFDNSQKEPSLLPARIPTLLLNGSSGIAVGMATNIPPHNLGELVDALSVLIHNPEATLQELLEYMPGPDFPTGGIIMGNIGILEAYRAGRGRIIVRGKTDVELLDSKTKRTAVIIKEIPYQTNKSALVEKIAELVENKSLEGISDIRDESDRSGMRIVIELKRGSDPSIVLNNMYRLTALQSSFSCNMVGILDGQPKLMGLKELLQAFLDFRCSVIERRARFKLSQAQERKHIVEGIIVGLDNVDGVIRIIRESSSNAMASAALRNEYDLSEKQAEALLDMTLRKLTLLESKKFVDESKSLAGQISKLNELLSSKKQIFQLIEQEANELKTKFSTPRRSMLEDSDSGQLDEIDVIPNDEMLLAVSEKGYLKRMKPNTFNLQHRGTIGKSVGKMRVNDAMSDFLVCHAHDHVLYFSDKGIVYSSRAYKIPECTRTAAGTPLVQILSVSDGERITSIIPVSEFSGDQYLVMLTVNGYIKKVSMNFFSSIRTTGIIAIQLVPGDELKWVRCCTNDDLVAMASQNGMVILSSCETLRTLGRNTRGSVAMRLKTGDKMACMDIIPAADLQRASENPQSQGKDLGAPWLLFVSESGLGKRVPLSSFRRSPLNRVGLKGYKLSPEDRLAAVFVVGFSLAEDGESDEQVVLVSQSGTVNRIKVRDVSIQSRYARGVILMRLEHAGKIQSASLISATEEEVDTEKVEANVELHTEKSATQ 954
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00092 954 CDD TOP4c 126 572 IPR002205 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 NCBIfam DNA gyrase subunit A 103 927 - -
Eupl1g00092 954 Gene3D - 332 430 - -
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 602 648 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 825 870 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 883 928 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 756 795 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 652 702 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Pfam DNA gyrase C-terminal domain, beta-propeller 708 752 IPR006691 GO:0003677(InterPro)|GO:0003916(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 SUPERFAMILY Type II DNA topoisomerase 126 582 IPR013760 GO:0003918(InterPro)|GO:0005524(InterPro)
Eupl1g00092 954 FunFam DNA gyrase subunit A 332 430 - -
Eupl1g00092 954 FunFam DNA gyrase subunit A 595 929 - -
Eupl1g00092 954 FunFam DNA gyrase subunit A 127 389 - -
Eupl1g00092 954 Hamap DNA gyrase subunit A [gyrA]. 95 930 IPR005743 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Gene3D Topoisomerase, domain 3 467 555 IPR013757 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)
Eupl1g00092 954 PANTHER DNA GYRASE-TOPOISOMERASE SUBUNIT A 96 937 IPR050220 GO:0003677(PANTHER)|GO:0003918(PANTHER)|GO:0005524(PANTHER)|GO:0005737(PANTHER)|GO:0006265(PANTHER)|GO:0009330(PANTHER)
Eupl1g00092 954 SUPERFAMILY GyrA-ParC C-terminal domain-like 598 940 IPR035516 -
Eupl1g00092 954 Pfam DNA gyrase-topoisomerase IV, subunit A 127 568 IPR002205 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Gene3D Topoisomerase II, domain 5 127 582 IPR013758 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 FunFam DNA gyrase subunit A 458 556 - -
Eupl1g00092 954 SMART topIV4 106 562 IPR002205 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005524(InterPro)|GO:0006265(InterPro)
Eupl1g00092 954 Gene3D - 597 945 IPR035516 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00092 K02469 DNA gyrase subunit A [EC:5.6.2.2]