AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00093 ATGTTTGTAAAACAACGCCATTTTACATACATTCGAATAGGAGAAGATCTGATTTGGAAGAAAACAGAGACAACAATGGGGCTGACATTTACGAAGCTGTTCAGTAGGCTCTTTGCGAAGAAGGAGATGAGGATCCTCATGGTTGGTCTTGATGCCGCTGGTAAAACAACCATCCTCTACAAGCTCAAGCTTGGCGAGATCGTCACTACCATCCCTACAATTGGTTTCAATGTAGAGACTGTGGAGTACAAGAATATCAGCTTCACTGTTTGGGATGTTGGGGGCCAGGATAAGATCAGACCATTATGGAGGCACTATTTCCAAAACACACAGGGTCTCATATTTGTTGTTGACAGCAATGATAGGGACCGTGTAGTTGAGGCAAGGGATGAGCTCCACAGGATGCTAAATGAGGATGAGTTACGAGAAGCTGTGTTGCTTGTTTTCGCAAATAAGCAAGATCTGCCAAATGCAATGAATGCTGCTGAAATTACTGATAAGCTTGGTTTGCATTCCTTGCGCCAGCGACACTGGTACATCCAGAGCACCTGTGCTACATCTGGTGAGGGATTGTACGAAGGGCTGGATTGGCTCTCCAACAACATCGCCAACAAGGACTTGCTTGATCTCTTTACAGGCATGAACTATGGCCGTGCTGGGGCAGAAATAGGGAGTTATCTTACAGGCATTTTATGTCTTACAACTGGGATGATCACTCACTGGATTCTAGGTTTTATACCTTCTTTGATGATTGCCTTGGCGAGAATAGATTTGTTCTTTATCTAG 786 44.27 MFVKQRHFTYIRIGEDLIWKKTETTMGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELREAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKDLLDLFTGMNYGRAGAEIGSYLTGILCLTTGMITHWILGFIPSLMIALARIDLFFI 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00093 261 SMART rab-sub-5 43 209 - -
Eupl1g00093 261 FunFam ADP-ribosylation factor 1 26 206 - -
Eupl1g00093 261 CDD Arf1-5-like 43 201 IPR045872 GO:0003924(InterPro)
Eupl1g00093 261 PANTHER ADP RIBOSYLATION FACTOR-RELATED 26 203 IPR024156 GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Eupl1g00093 261 Pfam ADP-ribosylation factor family 30 202 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 206 IPR027417 -
Eupl1g00093 261 PRINTS GTP-binding SAR1 protein signature 99 124 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 PRINTS GTP-binding SAR1 protein signature 72 96 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 PRINTS GTP-binding SAR1 protein signature 144 165 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 PRINTS GTP-binding SAR1 protein signature 44 67 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 SMART sar-sub-1 26 202 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl1g00093 261 NCBIfam small GTP-binding protein domain 41 181 IPR005225 GO:0005525(InterPro)
Eupl1g00093 261 SMART arf-sub-2 26 206 - -
Eupl1g00093 261 ProSiteProfiles small GTPase Arf family profile. 36 202 - -
Eupl1g00093 261 Gene3D - 29 208 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00093 K07937 ADP-ribosylation factor 1/2
Eupl1g00093 K07939 ADP-ribosylation factor 4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr11:6080361 Eupl1g00093 Eupl-Chr1:3168838 dispersed
Eupl Eupl-Chr12:29620101 Eupl1g00093 Eupl-Chr1:3168838 dispersed
Eupl Eupl-Chr1:3168838 Eupl4g00674 Eupl-Chr4:10222956 dispersed
Eupl Eupl-Chr1:3168838 Eupl5g00143 Eupl-Chr5:3730462 wgd