AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00098 ATGAAAAACATTCCTGTGCTGTTGATGGGCTGTGGAGGTGTGGGGAGACAGCTCCTTCAACACATAGTCAGCTGCAGATCTCTTCACGCCAAACAGGGACTGTTCTTGCGAGTCGTGGGAGTATGCGACAGTAAATCGCTACTCATCGCCTCTGATGTGCTCACAATGGACTTAAATGACGCCTTCTTGATGGAAATTTGCCGCGTTAAGTCCTCTGGCTCTTCTCTGTCCACGCTTAGTGGCTTCGGTGAATGCCAAATATTCACAAACTTGGAATCAACAAGAAAATTTATAGATATCGCGGCCCTTCTGGGCAGATCAACTGGTTTGGCATTTGTTGATTGCTCTGCCAGTTCCGAGACCATTGGAGTTCTAACACGGGTTGTTGATTTGGGTTGTTGCATTGTGCTGGCAAATAAGAAGCCTCTCACATCTGGAATGGAAGATTATGAGAAGTTGGTCTCTCATCCACGTCGCATTCGACATGAATCAACGGTTGGTGCTGGCCTTCCTGTGATAACTTCCTTAAACCGTATACTTGCATCTGGAGACCCCATCAATTGTATCATTGCGAGTTTGAGTGGCACATTAGCGTTTGTAATGAGTGAAGTTGAAGATGGAATGCCATTCAGCGAAGTTGTTAAAGCAGCTAAATGCCTTGGATACACAGAACCAGATCCGCGGGATGACCTTAGTGGAATGGATGTTGCAAGAAAGGCTTTGATCCTTGCTCGGCATCTTGGGTGGCGGATTAATTTGGATAACATTAAAGTTGATAGCTTGTATCCTGATGAAATGGGCCCTAATACAATGTCTGTGGAAGATTTTTTGGCCAATGGACTTCCATCACTGGATAAAAAAATTGAAAAGAGTATTGAAGTGGCTTCTGAAGATGGGAATGTGCTCCGTTATGTCTGTACGATTGAGGGATCAAGATGTTGGATTGGCATTAAACAAGTTCCAAAAAATTCTCCTTTGGGGAGACTGAGAGGAAGTGATAATGTGTTGGAGATATACAGCAGGTGTTACAATGACTTGCCGTTGGTGATCCAAGGTGCTGGAGCAGGTAACGACACTACAGCAGCAGGAGTCCTTGCCGATATCCTTGATCTTCAGGATCTTTTCCCTTGA 1131 44.92 MKNIPVLLMGCGGVGRQLLQHIVSCRSLHAKQGLFLRVVGVCDSKSLLIASDVLTMDLNDAFLMEICRVKSSGSSLSTLSGFGECQIFTNLESTRKFIDIAALLGRSTGLAFVDCSASSETIGVLTRVVDLGCCIVLANKKPLTSGMEDYEKLVSHPRRIRHESTVGAGLPVITSLNRILASGDPINCIIASLSGTLAFVMSEVEDGMPFSEVVKAAKCLGYTEPDPRDDLSGMDVARKALILARHLGWRINLDNIKVDSLYPDEMGPNTMSVEDFLANGLPSLDKKIEKSIEVASEDGNVLRYVCTIEGSRCWIGIKQVPKNSPLGRLRGSDNVLEIYSRCYNDLPLVIQGAGAGNDTTAAGVLADILDLQDLFP 376
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00098 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 189 IPR036291 -
Eupl1g00098 376 FunFam Bifunctional aspartokinase-homoserine dehydrogenase 182 353 - -
Eupl1g00098 376 FunFam Homoserine dehydrogenase 6 201 - -
Eupl1g00098 376 ProSitePatterns Homoserine dehydrogenase signature. 217 239 IPR019811 GO:0006520(InterPro)
Eupl1g00098 376 PIRSF HDH-short 1 376 IPR022697 GO:0004412(InterPro)
Eupl1g00098 376 Gene3D - 5 371 - -
Eupl1g00098 376 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 171 356 - -
Eupl1g00098 376 Pfam Homoserine dehydrogenase 171 369 IPR001342 GO:0006520(InterPro)
Eupl1g00098 376 PANTHER - 2 375 IPR011147 GO:0004412(InterPro)|GO:0009067(InterPro)
Eupl1g00098 376 Gene3D Dihydrodipicolinate Reductase; domain 2 182 353 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00098 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:3556447 Eupl1g00098 Eupl-Chr1:3242902 dispersed
Eupl Eupl-Chr1:3242902 Eupl9g01504 Eupl-Chr9:32185173 dispersed
Eupl Eupl-Chr1:3242902 Eupl3g00101 Eupl-Chr3:2873676 transposed