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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00101 ATGGCCACCCTGTTAAGAACATCTGCTTATCTCCATCCTCCTCCATCAGGCCTAAGCACCACATCCTTGGAAACACCGAAACGCTTATTGTGTTTATCTTTCAATCAGAGAAGACTAAAACATTCTCAGATAAAACTTTCCCATCTCTCCAAGAATAAATCAATTTGGTCCCCAAATTTTCTCTCATTTGCTGCCTCTGGAGAAACTACAGAGACCAACCAGGTTGAACAAACTCAAACCCAGGAAATTTCAGATGATGAAGCTCCCATTGAAGATGCTAGTGATGGTGTCACTGTCAATGGTGAAGAAAAACTAGCTTCACCCATTGTGGGATTGCTTCAATCATATAAAGAAGCTTTAGCAGGTAATGATGAGTCCAAGGTTGCGGAAATAGAAGCCTTTCTTCAATCCATTGAGGAAGAGAAAAATTCTCTTGCGATCAAAGTGGTAACCTTGTCTCAAGAACTGTCATCGGAGAGGGAACGGATTCTTAGGATCAGTGCGGATTTTGATAATTTTAGAAAGAGGACAGAGAGAGAACGGCTTTCAGTGGTGACAAATGCACAAGGTGAAGTGGTGGAGAGTTTGCTGCCTGTGTTGGATAACTTCGAGAGAGCCAAATCTCAAATCAAGGTGGAGACTGAGGGAGAGGAGAAGATCAACAATAGCTATCAGAGCATATATAAACAGTTTGTTGAGATTCTGGTTTCACTAGGCGTTGTTCCTGTGGAGACGGTTGGGAACCCCTTTGATCCTTTGCTGCACGAGGCAATCATGCGTGAAGACTCGACGGAGTATGAAGAAGGTATTATAATTCAAGAATTCCGGAAGGGGTTCAAATTAGGTGAAAGGCTTTTGCGCCCCTCGATGGTGAAGGTATCTGCTGGTCCAGGTCCTGCAAAGCTCGAAGAAGCTGGGCCATCAGGGGATGCCGAGGGTGGCAGCGAAACCAGTGAGGAGAGCAGTACTGAAGGAGAGTCTGCTTAA 987 44.68 MATLLRTSAYLHPPPSGLSTTSLETPKRLLCLSFNQRRLKHSQIKLSHLSKNKSIWSPNFLSFAASGETTETNQVEQTQTQEISDDEAPIEDASDGVTVNGEEKLASPIVGLLQSYKEALAGNDESKVAEIEAFLQSIEEEKNSLAIKVVTLSQELSSERERILRISADFDNFRKRTERERLSVVTNAQGEVVESLLPVLDNFERAKSQIKVETEGEEKINNSYQSIYKQFVEILVSLGVVPVETVGNPFDPLLHEAIMREDSTEYEEGIIIQEFRKGFKLGERLLRPSMVKVSAGPGPAKLEEAGPSGDAEGGSETSEESSTEGESA 328
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00101 328 MobiDBLite consensus disorder prediction 292 328 - -
Eupl1g00101 328 PANTHER GRPE PROTEIN 61 294 IPR000740 GO:0000774(PANTHER)|GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0042803(InterPro)|GO:0051082(PANTHER)|GO:0051087(InterPro)
Eupl1g00101 328 FunFam Protein GrpE 239 294 - -
Eupl1g00101 328 Gene3D - 122 236 IPR013805 -
Eupl1g00101 328 Hamap Protein GrpE [grpE]. 73 295 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 FunFam GrpE protein homolog 121 237 - -
Eupl1g00101 328 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 147 239 IPR013805 -
Eupl1g00101 328 CDD GrpE 160 293 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 Gene3D Head domain of nucleotide exchange factor GrpE 239 294 IPR009012 GO:0006457(InterPro)
Eupl1g00101 328 MobiDBLite consensus disorder prediction 1 22 - -
Eupl1g00101 328 Coils Coil 135 155 - -
Eupl1g00101 328 MobiDBLite consensus disorder prediction 77 99 - -
Eupl1g00101 328 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 241 296 IPR009012 GO:0006457(InterPro)
Eupl1g00101 328 PRINTS GrpE protein signature 192 207 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 PRINTS GrpE protein signature 274 293 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 PRINTS GrpE protein signature 164 180 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 PRINTS GrpE protein signature 247 262 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 ProSitePatterns grpE protein signature. 250 293 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Eupl1g00101 328 Pfam GrpE 139 294 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00101 K03687 molecular chaperone GrpE
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr13:21648717 Eupl1g00101 Eupl-Chr1:3313753 dispersed