AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00108 ATGGAAGAGAACCAGGCAAACAGTTCGAGGCGGAGAGAGTGGTGCGATCTTCCAATCGAGCTTCTGCTATTAACATGTGCACATCTCTCCGTTCTCGATCGCCTCTCTATCCGTTCCGTCTGTCGGGGTTGGCGCTCGGCTTCCTCTCAGTGTCTCCTGGAAAATCAACCACGAGACCAACCACCTTGGATCATGTTCTTGAAGGACTACGATTTAACTAGTGATAAATTGGTGGACTCATCTACCAACCGTCGCTACACCATCCATATTCCAGAATTGCAAGGGAGGACTAGAGTGCTCTTGTCGAGGCACGGCTGGCTCTTACTACGTTCATTTTCCAAGAAAAACCGTTCGCCTTTCTTCTTTAATCCCTTCTCTAGAGCAAGAATTGATCCCCCTTATTTAAATTTAGCTGGATCAGTTATGACCACCTTCGCTCTCTCTGCTCCTCCTACATCCCAAGATTGCATCCTATTTGCCATCGGTATGTTATTTTCCGATCGTCAAACTTTCAGTATTAGTACCTGTCGCCGTGGGGAAGACAAATGGACTACAAACATGTATCAAAATAATCAGCTCCATGGACAGAGAGTTCTTAACGTGGTGTTTTCTAAGGGGATCTTCTATTGCTTCCATATAGGAGGAGAGGTGAGCGTTTTCAACGTTGAAAACTATACTTGGGAATGTTTGGGAAGTCCGTTTGATCATATGAGAGGAGCTTCTCTCTTTCTATCGTATGGGATTGAGCGCTGTGACGGGAAAGTAATTCTATATCTTGAACGCAAAGATCATTCTCTTCATAAGGTTATATTGGAGGGAATACAGAGGCGAAGAGTGGTGAAGGACACGAAGGAACTGCCTGTGCCTGTACCTACAATAGATGACGGAGGAGGTCTTCTTTTTCTCACTGTAGATGAAGAAATTGCACAGACACAGAACAAGGACAAGCTTGTCATTTTAGGCTCATGTCACGGCAAGTATGATCCAGATACTGGTTTAATAACTTTTCACTGGCGCTACTCGAATATTGAACAGATATACCGTAATTGCAACTGTAAAAATGCTATTTGGATTGAACCCAAGTGGGTTTCCCCTTCCCCTAGCCTTACTTGGACTACCTAA 1122 44.47 MEENQANSSRRREWCDLPIELLLLTCAHLSVLDRLSIRSVCRGWRSASSQCLLENQPRDQPPWIMFLKDYDLTSDKLVDSSTNRRYTIHIPELQGRTRVLLSRHGWLLLRSFSKKNRSPFFFNPFSRARIDPPYLNLAGSVMTTFALSAPPTSQDCILFAIGMLFSDRQTFSISTCRRGEDKWTTNMYQNNQLHGQRVLNVVFSKGIFYCFHIGGEVSVFNVENYTWECLGSPFDHMRGASLFLSYGIERCDGKVILYLERKDHSLHKVILEGIQRRRVVKDTKELPVPVPTIDDGGGLLFLTVDEEIAQTQNKDKLVILGSCHGKYDPDTGLITFHWRYSNIEQIYRNCNCKNAIWIEPKWVSPSPSLTWTT 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00108 373 PANTHER OS09G0392200 PROTEIN 3 235 IPR044619 -
Eupl1g00108 373 Pfam Domain of unknown function (DUF295) 62 229 IPR005174 -
Eupl1g00108 373 CDD F-box-SF 16 49 - -
Eupl1g00108 373 SMART fbox-2 17 56 IPR001810 GO:0005515(InterPro)
Eupl1g00108 373 SUPERFAMILY F-box domain 6 52 IPR036047 GO:0005515(InterPro)
Eupl1g00108 373 Pfam F-box domain 14 51 IPR001810 GO:0005515(InterPro)
Eupl1g00108 373 Gene3D - 13 52 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00108 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:27866198 Eupl1g00108 Eupl-Chr1:3568897 dispersed
Eupl Eupl-Chr1:3568897 Eupl7g01290 Eupl-Chr7:33426901 dispersed