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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00117 ATGGTTGCTCCTCTAGTAGCAGGTGTTTCTGTGGCAGCTGCTGCCTTGGGAGGCCGATATATGATCCAGGCATGGCAAGCATTCAAAGCTCGCCCTGCTGTACCCCGGATGCGCAGATTTTATGAGGGTGGATTTGACCGGGTCATGACGAGACGAGAAGCTGCATTAATCCTTGGCGTCAGAGAGCATGCAGTGATGGAGAAGATCAAGGAGGCCCACAGGAGAGTGATGGTGGCAAACCACCCTGACAGTGGTGGGAGCCATTATCTTGCTTCCAAGATCAACGAGGCTAAGGATATCTTGATGGGGAAAACAAAGGGGAGTGGGTCCGCATTCTAG 339 52.8 MVAPLVAGVSVAAAALGGRYMIQAWQAFKARPAVPRMRRFYEGGFDRVMTRREAALILGVREHAVMEKIKEAHRRVMVANHPDSGGSHYLASKINEAKDILMGKTKGSGSAF 112
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00117 112 ProSiteProfiles dnaJ domain profile. 53 106 IPR001623 -
Eupl1g00117 112 CDD DnaJ 57 101 IPR001623 -
Eupl1g00117 112 Gene3D DnaJ domain 39 106 IPR036869 -
Eupl1g00117 112 PANTHER UNCHARACTERIZED 1 108 - GO:0001405(PANTHER)|GO:0001671(PANTHER)|GO:0030150(PANTHER)
Eupl1g00117 112 SMART dnaj-3 52 106 IPR001623 -
Eupl1g00117 112 FunFam Import inner membrane translocase subunit tim14 39 105 - -
Eupl1g00117 112 SUPERFAMILY Chaperone J-domain 43 104 IPR036869 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00117 K09539 DnaJ homolog subfamily C member 19
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:4132031 Eupl2g01333 Eupl-Chr2:30138484 dispersed
Eupl Eupl-Chr1:4132031 Eupl5g01498 Eupl-Chr5:38448311 transposed