AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00120 ATGAATGCTTCTAAAGTCAAGCGTCTAGTGGGCAAATATGAGGTGGGGAGGACAATTGGGGAGGGGACATTTGCAAAGGTGAAGTTTGCAAGGAATTCTGAGACTGGGGAACCTGTGGCTCTCAAGATCCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAACAGATAAAACGGGAAGTAGCGACAATGAAGTTAATAAAGCATCCAAATGTTGTCAGCCTGTATGAGGTAATGGGGAGCAAAACAAAGATTTTTATTGTTCTGGAGTTTGTTACTGGGGGAGAGCTCTTTGACAAAATTGTCAACCATGGCAGGATGAGGGAGGATGAGGCACGGAGGTATTTCCAGCAACTTATTAATGCTGTTGATTATTGCCATAGCAGGGGTGTTTACCACAGAGACTTAAAGCCAGAAAATTTACTATTGGATGCATATGGAAACCTCAAAGTTTCTGATTTTGGATTAAGTGCACTCTCCCAACAATGCAGGGATGATGGCCTGCTTCACACTACTTGTGGAACCCCGAACTATGTTGCTCCAGAGGTCCTTAATGATAGAGGATATGACGGGACAACTGCAGACTTGTGGTCATGTGGGGTCATCCTATTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTTATGACCCTGTATAAAAAAATCTCGGTTGCTGAATTTAACTGTCCACCTTGGCTCTCTTTAGGCGCTATGAGATTGATCACTCGAATCTTGGATCCCAGCCCTATGACTCGCATCACTATCTCCGAAATTTTGGAGGATGATTGGTTCAAGAAAGGTTTTAAGCCACCCGTGTTTGAGGAGAAAGACGATACAAACTTGGATGACGTAGAAGCCGTTTTTAAGGACTCAGAGGAACATCATGTGACAGAGAAGAAAGAAGAACAGCCAGCTGCTATGAATGCATTTGAATTGATTTCCATGTCAAAGGGGCTCAATCTTGGAAATTTGTTTGAAATAGAGCAGGAATTTAAGAGGGAAACAAGGTTTACATCAAAATGTCCTGCCAATGAGATCATCAGTAAGATTGAAGAAGCTGCAAAGCCTCTTGGATTTGATGTACACAAGAAAAACTACAAGATGAGGCTGGAAAATATGAAAGCAGGGAGAAAGGGAAACCTCAATGTTGCTACTGAGGTATTTCAAGTGGCTCCTTCTCTTCATATGGTTGAGGTACGGAAAGCAAAAGGCGATACTTTGGAGTTCCACAAGTTCTATAAAAGCCTTTCAACTGGCCTCAAGGATGTGGTTTGGAAAAGTGAAGAGGACATGCAGGATGTGAACAAAGGATGA 1326 42.46 MNASKVKRLVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVSLYEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMREDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQCRDDGLLHTTCGTPNYVAPEVLNDRGYDGTTADLWSCGVILFVLLAGYLPFDDSNLMTLYKKISVAEFNCPPWLSLGAMRLITRILDPSPMTRITISEILEDDWFKKGFKPPVFEEKDDTNLDDVEAVFKDSEEHHVTEKKEEQPAAMNAFELISMSKGLNLGNLFEIEQEFKRETRFTSKCPANEIISKIEEAAKPLGFDVHKKNYKMRLENMKAGRKGNLNVATEVFQVAPSLHMVEVRKAKGDTLEFHKFYKSLSTGLKDVVWKSEEDMQDVNKG 441
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00120 441 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Eupl1g00120 441 Pfam NAF domain 308 367 IPR004041 GO:0007165(InterPro)
Eupl1g00120 441 FunFam Non-specific serine-threonine protein kinase 6 309 - -
Eupl1g00120 441 CDD CIPK-C 312 426 - -
Eupl1g00120 441 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Eupl1g00120 441 SUPERFAMILY Protein kinase-like (PK-like) 9 280 IPR011009 -
Eupl1g00120 441 FunFam Non-specific serine-threonine protein kinase 305 430 - -
Eupl1g00120 441 FunFam Non-specific serine-threonine protein kinase 4 92 - -
Eupl1g00120 441 Gene3D Kinase associated domain 1, KA1 305 430 - -
Eupl1g00120 441 CDD STKc-SnRK3 12 267 - -
Eupl1g00120 441 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Eupl1g00120 441 SMART serkin-6 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Eupl1g00120 441 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165(InterPro)
Eupl1g00120 441 Gene3D Transferase(Phosphotransferase) domain 1 93 274 - -
Eupl1g00120 441 PANTHER CALCIUM-CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 418 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Eupl1g00120 441 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Eupl1g00120 441 ProSitePatterns Serine-Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00120 K07198 5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.31]
Eupl1g00120 K02216 serine/threonine-protein kinase CHEK1 [EC:2.7.11.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:4193591 Eupl8g00137 Eupl-Chr8:2590579 dispersed
Eupl Eupl-Chr2:26710270 Eupl1g00120 Eupl-Chr1:4193591 transposed
Eupl Eupl-Chr9:21571893 Eupl1g00120 Eupl-Chr1:4193591 transposed
Eupl Eupl-Chr1:4193591 Eupl5g00185 Eupl-Chr5:4911930 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00833 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 52.14 4.81e-93 286.0
Eupl2g01247 . 28 460 CBL-interacting serine-threonine protein kinases family AT1G30270 84.758 0.0 776.0
Eupl6g01174 . 11 489 CBL-interacting serine-threonine protein kinases family AT4G18700 78.288 0.0 758.0
Eupl6g01172 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 71.167 0.0 648.0
Eupl3g00731 . 8 285 CBL-interacting serine-threonine protein kinases family AT4G24400 42.612 5.65e-70 223.0
Eupl1g01535 . 6 264 CBL-interacting serine-threonine protein kinases family AT5G35410 34.082 1.02e-44 159.0
Eupl3g01677 . 8 297 CBL-interacting serine-threonine protein kinases family AT4G24400 43.522 1.96e-72 230.0
Eupl1g00120 . 5 373 CBL-interacting serine-threonine protein kinases family AT2G26980 85.366 0.0 676.0
Eupl4g01160 . 14 270 CBL-interacting serine-threonine protein kinases family AT2G26980 51.751 2.99e-91 282.0
Eupl1g00919 . 1 421 CBL-interacting serine-threonine protein kinases family AT2G30360 60.14 0.0 516.0
Eupl1g00924 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 70.33 0.0 666.0
Eupl8g00919 . 8 282 CBL-interacting serine-threonine protein kinases family AT4G24400 43.902 4.58e-72 228.0
Eupl3g00822 . 1 329 CBL-interacting serine-threonine protein kinases family AT4G24400 83.636 0.0 580.0
Eupl9g01261 . 15 438 CBL-interacting serine-threonine protein kinases family AT4G30960 78.066 0.0 654.0
Eupl10g00983 . 3 273 CBL-interacting serine-threonine protein kinases family AT5G10930 36.496 1.03e-55 184.0
Eupl8g00137 . 11 430 CBL-interacting serine-threonine protein kinases family AT1G01140 74.065 0.0 675.0
Eupl8g00072 . 28 288 CBL-interacting serine-threonine protein kinases family AT1G30270 38.095 1.67e-55 191.0
Eupl13g00114 . 8 265 CBL-interacting serine-threonine protein kinases family AT4G24400 43.866 3.47e-66 214.0
Eupl9g00356 . 31 301 CBL-interacting serine-threonine protein kinases family AT1G30270 36.996 8.51e-61 198.0
Eupl11g01465 . 170 350 CBL-interacting serine-threonine protein kinases family AT1G01140 34.946 1.10e-20 92.8
Eupl11g01464 . 138 312 CBL-interacting serine-threonine protein kinases family AT1G30270 35.349 6.62e-28 108.0
Eupl14g00030 . 18 272 CBL-interacting serine-threonine protein kinases family AT2G30360 38.931 2.76e-54 191.0
Eupl14g00070 . 341 445 CBL-interacting serine-threonine protein kinases family AT1G01140 80.952 7.22e-55 180.0
Eupl7g00875 . 6 426 CBL-interacting serine-threonine protein kinases family AT4G14580 58.685 2.15e-170 483.0
Eupl5g01547 . 17 263 CBL-interacting serine-threonine protein kinases family AT5G35410 35.294 4.34e-44 157.0
Eupl5g01931 . 13 318 CBL-interacting serine-threonine protein kinases family AT2G30360 34.824 7.76e-55 192.0
Eupl5g02313 . 1 453 CBL-interacting serine-threonine protein kinases family AT5G58380 69.383 0.0 653.0
Eupl5g02319 . 1 421 CBL-interacting serine-threonine protein kinases family AT2G30360 62.383 0.0 528.0
Eupl10g00268 . 16 441 CBL-interacting serine-threonine protein kinases family AT4G30960 74.083 0.0 635.0
Eupl10g00267 . 29 483 CBL-interacting serine-threonine protein kinases family AT5G25110 68.043 0.0 646.0
Eupl7g00171 . 36 329 CBL-interacting serine-threonine protein kinases family AT1G30270 24.044 2.70e-20 94.0
Eupl5g00266 . 4 271 CBL-interacting serine-threonine protein kinases family AT4G24400 49.627 6.00e-88 275.0
Eupl7g01705 . 8 436 CBL-interacting serine-threonine protein kinases family AT3G17510 71.096 0.0 611.0
Eupl3g00215 . 8 288 CBL-interacting serine-threonine protein kinases family AT4G24400 42.282 7.50e-69 221.0
Eupl2g00897 . 14 489 CBL-interacting serine-threonine protein kinases family AT4G18700 78.992 0.0 769.0
Eupl2g00896 . 1 425 CBL-interacting serine-threonine protein kinases family AT5G45820 69.3 0.0 638.0
Eupl9g01075 . 1 411 CBL-interacting serine-threonine protein kinases family AT5G57630 62.763 0.0 513.0
Eupl5g00240 . 360 466 CBL-interacting serine-threonine protein kinases family AT1G30270 56.075 8.00e-33 117.0
Eupl1g01868 . 17 277 CBL-interacting serine-threonine protein kinases family AT2G30360 36.194 2.15e-51 183.0
Eupl13g01446 . 28 288 CBL-interacting serine-threonine protein kinases family AT1G30270 36.431 1.35e-51 174.0
Eupl9g01501 . 5 441 CBL-interacting serine-threonine protein kinases family AT5G35410 76.888 0.0 718.0
Eupl13g01109 . 13 311 CBL-interacting serine-threonine protein kinases family AT2G26980 40.0 6.84e-70 221.0
Eupl5g00185 . 6 373 CBL-interacting serine-threonine protein kinases family AT2G26980 85.326 0.0 671.0
Eupl12g01349 . 1 444 CBL-interacting serine-threonine protein kinases family AT3G17510 70.721 0.0 619.0
Eupl1g00308 . 11 281 CBL-interacting serine-threonine protein kinases family AT4G18700 30.392 6.39e-21 94.7
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl Pkinase 7.4e-73 CL0016 PK CAMK_CAMKL-CHK1