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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00123 ATGGGTCGATCCCATTCTCGCATCCACCTTCGTGCTCTTCAACTTCTTCAAGCTGTTCAACTTCTTCGAACACAAGATGGGCCGTGCAAAACTCAATATGGAGCCCATACCCAAACTCGAAATGCGACTTTTTTAAAGAGAATGAAAGGGTTGAAAAAGAAGATTTATGAATTCTCCACCCTTTGCGGAGTTGACGCATCCATGATCATGTACGCATCGAAACAAGACAACCGTCTGCTTGAGCCAGAGATATGGCCAGAGAACAAAAATGAAGTCCATCGGATCATCAATCAATATCAACATATAGGGAAGGACAAACGGATGAAGCGAAACCTTGATCTTTCTGACATCATTGAGGATCGGAAGAAGATCAAAGATGAACCCACTAAAGTACGCCGAAACAACAATGAGACTGAGCACCTCATGCGGGACGATTGGATCGATGATTTCACGATGGAGCAACTACAGCAACTTATAGGCACATTGGACTCGAAGCTTGAAATGGTGAAGACGAAAATTGAATTGATGAATGGGAAAAAAAACGCCCTGGAAGGAGTAGCAAGGATGATCGAGCACTCCCACCCAGCACCGAGCACATATCATGGGAATATGTGGAAAGATGTAATGCAAACACATCCTCTTGCTTGTGTGAAACCGCTGGATCACCATATTACAGCCATTGATTACCCTTATGAACCAGGCCTGATCTTTGATGGCAGACACGCGATGACTCCGATGATGTCGATGAATGGCTTTAGTTGCGAAAATTTCCAGGGTGGGTCCATCGGGAACCTTTCTTATTCTTCATTTAACGGTCCATTTATGTATGATTCAGGATTGAGGACATTGGAAGAGATGGAATTCATCAATTAA 873 43.64 MGRSHSRIHLRALQLLQAVQLLRTQDGPCKTQYGAHTQTRNATFLKRMKGLKKKIYEFSTLCGVDASMIMYASKQDNRLLEPEIWPENKNEVHRIINQYQHIGKDKRMKRNLDLSDIIEDRKKIKDEPTKVRRNNNETEHLMRDDWIDDFTMEQLQQLIGTLDSKLEMVKTKIELMNGKKNALEGVARMIEHSHPAPSTYHGNMWKDVMQTHPLACVKPLDHHITAIDYPYEPGLIFDGRHAMTPMMSMNGFSCENFQGGSIGNLSYSSFNGPFMYDSGLRTLEEMEFIN 290
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00123 290 SUPERFAMILY SRF-like 33 120 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Eupl1g00123 290 ProSiteProfiles MADS-box domain profile. 36 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Eupl1g00123 290 SMART madsneu2 1 87 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Eupl1g00123 290 Gene3D - 37 125 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Eupl1g00123 290 PANTHER SERUM RESPONSE FACTOR HOMOLOG 37 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Eupl1g00123 290 Coils Coil 152 172 - -
Eupl1g00123 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 73 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00123 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:4293174 Eupl1g00131 Eupl-Chr1:4428059 dispersed
Eupl Eupl-Chr1:4293174 Eupl1g00127 Eupl-Chr1:4364473 proximal
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00970 . 1 236 MADS-box Transcription Factor family AT5G60910 61.667 4.58e-97 282.0
Eupl11g00969 . 1 251 MADS-box Transcription Factor family AT5G15800 64.542 4.15e-103 297.0
Eupl11g00784 . 1 309 MADS-box Transcription Factor family AT1G18750 55.272 2.75e-105 313.0
Eupl2g01007 . 18 251 MADS-box Transcription Factor family AT4G18960 68.376 3.56e-110 315.0
Eupl4g01341 . 1 251 MADS-box Transcription Factor family AT5G15800 68.127 8.94e-111 317.0
Eupl4g01342 . 1 227 MADS-box Transcription Factor family AT1G69120 63.436 3.07e-96 280.0
Eupl3g01101 . 1 215 MADS-box Transcription Factor family AT1G22130 45.778 2.35e-56 184.0
Eupl3g01314 . 1 238 MADS-box Transcription Factor family AT2G22540 68.487 3.94e-114 324.0
Eupl9g00260 . 62 135 MADS-box Transcription Factor family AT2G24840 56.962 2.95e-19 84.0
Eupl3g00518 . 1 142 MADS-box Transcription Factor family AT5G20240 43.662 4.67e-31 107.0
Eupl13g01820 . 62 233 MADS-box Transcription Factor family AT3G57230 61.85 4.93e-70 210.0
Eupl13g01819 . 1 62 MADS-box Transcription Factor family AT2G14210 87.097 3.50e-34 114.0
Eupl13g01658 . 1 331 MADS-box Transcription Factor family AT1G22130 51.009 2.71e-108 317.0
Eupl13g01502 . 1 139 MADS-box Transcription Factor family AT5G55690 34.0 2.60e-22 92.4
Eupl13g01875 . 61 217 MADS-box Transcription Factor family AT2G24840 49.375 2.40e-47 155.0
Eupl3g01702 . 47 157 MADS-box Transcription Factor family AT1G29960 33.582 4.74e-14 67.8
Eupl1g00123 . 12 151 MADS-box Transcription Factor family AT5G58890 32.394 1.56e-14 70.5
Eupl1g00131 . 6 231 MADS-box Transcription Factor family AT5G58890 30.0 5.40e-21 89.7
Eupl13g01290 . 47 150 MADS-box Transcription Factor family AT1G29960 31.746 4.34e-10 54.7
Eupl4g01102 . 1 309 MADS-box Transcription Factor family AT1G18750 51.765 7.41e-105 312.0
Eupl4g00255 . 1 243 MADS-box Transcription Factor family AT1G24260 72.47 8.59e-117 332.0
Eupl6g01271 . 18 251 MADS-box Transcription Factor family AT4G18960 70.513 4.78e-112 319.0
EuplCTG_258g00008 . 47 150 MADS-box Transcription Factor family AT1G29960 31.746 4.34e-10 54.7
Eupl1g00603 . 1 207 MADS-box Transcription Factor family AT1G69540 40.271 3.25e-47 158.0
Eupl3g00806 . 1 221 MADS-box Transcription Factor family AT3G57230 69.683 3.77e-109 312.0
Eupl3g00878 . 62 250 MADS-box Transcription Factor family AT2G24840 39.394 5.65e-43 143.0
Eupl3g00879 . 61 246 MADS-box Transcription Factor family AT2G24840 37.629 1.07e-29 108.0
Eupl3g00511 . 1 189 MADS-box Transcription Factor family AT5G20240 56.842 6.75e-70 209.0
Eupl10g00828 . 37 157 MADS-box Transcription Factor family AT1G29960 30.872 5.65e-12 61.6
Eupl13g00007 . 47 219 MADS-box Transcription Factor family AT1G77950 39.247 8.41e-30 110.0
Eupl13g00348 . 1 218 MADS-box Transcription Factor family AT3G54340 49.345 7.07e-67 204.0
Eupl13g00418 . 47 157 MADS-box Transcription Factor family AT1G29960 33.835 1.46e-13 66.6
Eupl13g00511 . 1 238 MADS-box Transcription Factor family AT2G22540 71.849 2.05e-117 333.0
Eupl3g01469 . 1 129 MADS-box Transcription Factor family AT1G77980 65.891 4.36e-50 160.0
Eupl3g01468 . 160 287 MADS-box Transcription Factor family AT1G22130 41.606 6.36e-24 94.7
Eupl3g01467 . 5 80 MADS-box Transcription Factor family AT1G22130 49.351 2.37e-18 80.9
Eupl3g01466 . 1 198 MADS-box Transcription Factor family AT1G22130 39.801 5.59e-35 132.0
Eupl2g01398 . 1 239 MADS-box Transcription Factor family AT5G23260 44.361 2.62e-56 181.0
Eupl9g00075 . 37 157 MADS-box Transcription Factor family AT1G29960 30.872 2.63e-11 59.7
Eupl14g00127 . 63 246 MADS-box Transcription Factor family AT2G24840 44.149 3.63e-48 158.0
Eupl14g00159 . 61 246 MADS-box Transcription Factor family AT2G24840 45.263 1.05e-52 168.0
Eupl5g00606 . 1 182 MADS-box Transcription Factor family AT5G13790 61.17 1.83e-73 221.0
Eupl5g02089 . 40 162 MADS-box Transcription Factor family AT1G29960 39.394 1.32e-22 87.0
Eupl7g00116 . 62 221 MADS-box Transcription Factor family AT2G24840 33.951 3.51e-24 96.3
Eupl7g01735 . 1 159 MADS-box Transcription Factor family AT5G48670 56.604 1.27e-54 176.0
Eupl3g02037 . 1 218 MADS-box Transcription Factor family AT3G54340 50.673 1.57e-73 221.0
Eupl14g00645 . 1 252 MADS-box Transcription Factor family AT2G45650 63.095 7.09e-108 310.0
Eupl14g00640 . 1 209 MADS-box Transcription Factor family AT2G45660 63.636 1.77e-85 252.0
Eupl7g01077 . 62 217 MADS-box Transcription Factor family AT2G24840 46.296 1.40e-48 158.0
Eupl7g01671 . 2 161 MADS-box Transcription Factor family AT1G65300 32.298 9.03e-20 86.7
Eupl12g00523 . 31 164 MADS-box Transcription Factor family AT1G29960 30.282 5.43e-12 60.1
Eupl2g01085 . 9 165 MADS-box Transcription Factor family AT1G29960 47.771 3.30e-56 172.0
Eupl13g01066 . 1 211 MADS-box Transcription Factor family AT1G71692 63.507 4.86e-81 238.0
Eupl13g01064 . 1 230 MADS-box Transcription Factor family AT4G09960 67.391 5.57e-108 309.0
Eupl12g01372 . 1 157 MADS-box Transcription Factor family AT5G48670 56.051 4.75e-55 177.0
Eupl8g00757 . 1 209 MADS-box Transcription Factor family AT2G45660 62.911 8.20e-83 243.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SRF-TF 9.8e-13 No_clan TF MADS-M-type