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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00133 ATGAGCCGACACCCAACTGTGAAGTGGGCCCAGAGTTCCGACAAGATCTACCTCACCGTTGAGCTATCTGATGCCAAAGATGTAAAGCTCAAGCTCGAGCCTGAAGGAAGGTTCATCTTCTCTGCCACCAAAGACAGTGTACCATATGAAGTCGACATTGAGTTGTATGATAAGATCAATGTTGAGGAGAGTAAAGTTAGTATTGGTGTAAGGAACATTGTGTATGTTATAAAGAAAGCTGACAAGAAATGGTGGGGAAGGCTACTTAAGCCGGAAGGAAAACCACCTGTGTTCCTCAAAGTGGATTGGGATAAATGGGTTGATGAAGATGATGAGAATGAGAAAGCTGGAATGGACTTTGATGGTATGGATTTCTCAAAGTTAGACATGGGTGGGGATGATTTTGATATTGATGAACCAAATGATGAGGAAGAAGCCGTCGAAACAAAAGAGGAGGAAATCAAGAAGGAAGGAGAACCCGTTGCAGTGGATCCTGAAGAGGCTAAGGCTTGA 513 43.66 MSRHPTVKWAQSSDKIYLTVELSDAKDVKLKLEPEGRFIFSATKDSVPYEVDIELYDKINVEESKVSIGVRNIVYVIKKADKKWWGRLLKPEGKPPVFLKVDWDKWVDEDDENEKAGMDFDGMDFSKLDMGGDDFDIDEPNDEEEAVETKEEEIKKEGEPVAVDPEEAKA 170
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00133 170 FunFam Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 124 - -
Eupl1g00133 170 MobiDBLite consensus disorder prediction 149 170 - -
Eupl1g00133 170 MobiDBLite consensus disorder prediction 114 170 - -
Eupl1g00133 170 ProSiteProfiles CS domain profile. 2 89 IPR007052 -
Eupl1g00133 170 Pfam CS domain 5 79 IPR007052 -
Eupl1g00133 170 MobiDBLite consensus disorder prediction 114 134 - -
Eupl1g00133 170 CDD p23-hB-ind1-like 5 111 - -
Eupl1g00133 170 PANTHER TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE 1 145 IPR045250 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)|GO:0051087(PANTHER)|GO:0051131(PANTHER)|GO:0051879(PANTHER)|GO:0051879(InterPro)
Eupl1g00133 170 SUPERFAMILY HSP20-like chaperones 1 136 IPR008978 -
Eupl1g00133 170 Gene3D - 2 125 IPR008978 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00133 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr13:33513171 Eupl1g00133 Eupl-Chr1:4447322 dispersed
Eupl Eupl-Chr1:4447322 Eupl7g01376 Eupl-Chr7:34809761 dispersed
Eupl Eupl-Chr1:4447322 Eupl12g01031 Eupl-Chr12:26540119 transposed