AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00135 ATGGAACCGGGTTCGGGCCCGGAATCTGTTCCTTCTTCGGGTTCTCACGATAAGTCTAGGGTTCTCGATGTAAGGCCTTTGCGTTGTTTGGCTCCAATGGGTGCAGCTCCACCACCTGGGTTCCAACCTGTTCCTCCTACCTTTGTTGGTGGTGCGCCCTCCTTTGGCCCTTACCCTCCTGCCTTCCCTCCATATTACTCCCCTTTCATCCCTTCAGAATCTCAAAGGCCACTTGATCAACAGCACCCACATATGCCATTTCAAAAACCAAAGTGGCCGCTGCCACCCCTGTTTACAGGAACCAAAAATGATGAGGCCGGGTCGTCCTCGAAGAATTCCGAAAACCATGAGGTTGGTATGCGGTCACAAAGTGCCAACAAGGAAGATGGTTGCATTAATGTGTATAGTAGTGATGTAGAAGCTACTAGTAATGGGGAGAAGCAGAAGAGTAATAAGTCACTGAAAAGAACGAGGAACAGCCATCAGGGCAGGTTATCGTCACCTGCCGACGGTAATAGGGAATCAGTTGAGACTGTTCTCATGAAATTTGATGCGCTCAAGCGAAGGCTTGCTCAAATTGAAGAAGCGAAGGAAGGGATGAGCAGACGTGCTGACTTAAAAGCTGGGACATTAATGATGACCGAAGGGCATCGGACAAATCTGAGGAAGAGAATGGGAACTGTTCCTGGGGTTGAGATTGGAGATGTTTTCTATTTCAGGTTTGAGATGTGCTTGGTGGGATTGCATGCTCCAACTATGGCTGGAATTGACTACATGAATTTCAAATTTGACCAAGAAGAAGAACCGGTGGCTGTAAGCATCGTTTCATCTGGAGGGTATGAGGATGATGTGGAACGTGGGGATGTGTTGATTTACAGTGGCCAGGGTGGGAATAGCTATAAGAAAGATGGGAAGCAAGTAGCTGACCAAAAGCTTGAAAGGGGTAATCTAGCATTGGAGAGAAGCTTGCAGCGAGCTAATGAGGTAAGAGTCATTCGGGGTGTGAAGGATGTTGCAAATCCAATGGGGAAGGTCTACATCTATGACGGTCTCTACAAAATCCAGGAGTCGTGGACAGAGAAAGGAAAGTCGGGTTGCAACGTTTTCAAGTATAAATTGTTGAGAGTACCTGGGCAGCCAGAGGCATTTGTGATTTGGAAATCAATCCAGCAATGGAGGGAAAAAATCACTTCTAGACCTGGGGTTATATTGCAAGACCTAACCTCGGGGGCAGAAAGTATACCAATTCCTCTTGTAAATGATATCGATGATGAGAGGGGGCCCTCTCATTTCACATATGTCACTAATCTCAAGTATTCCAAACCAGTCAACTCAATGGAACCTTCTTTAGGCTGCAAGTGCCCTAGTGGGTGCTTACCAGGTGATCTAGACTGCTCTTGTATTCGGAAAAATGGAGGCAATCTCCCATATACAGCCACTCGGGTTCTTGTGATCCGGAAACCCTTGATACATGAGTGTGGTCCTTCATGCCTCTGCTATCCTAATTGCCGAAACCAAGTGTCTCAAAATGGTCCGAAAGTCCATTTGGAGGTGTTTAAGACAAAAGATAGAGGTTGGGGTTTGCGGTCTTGGGATCCCATCCGTGCAGGTACATTTATCTGTGAATATGCAGGTCAAATCATAATAGATAAAACTGAGGTAGAAGAGGATGGGGACAAAGATGAGGAAGACGAGTATATCTTCGACACAACCCTCACCTGTGACAACTCATTTGAATGGAATTACATACCTGAGTTACTAGAAGAAGAGAGGCCTGCTGACTCGAATGAGGCATACAAGTCCCCATTACCCCTGATCATAAGTGCAAAAAATATTGGGAATGTAGCTCGTTTTATGAACCACAGTTGCTCTCCCAACGTCTTTTGGCAGCCGGTCTTACATGAACACGACAATGAAGCCTATCCTCATATTATGTTCTATGCGATTAAACACATTCCTCCCATGACAGAGTTGACATATGATTATTGTGCACATAGAAGAAGGAAAAAATGCTTATGTGGATCATCGAAATGCAGAGGTTCTTTTGGTTAG 2052 45.66 MEPGSGPESVPSSGSHDKSRVLDVRPLRCLAPMGAAPPPGFQPVPPTFVGGAPSFGPYPPAFPPYYSPFIPSESQRPLDQQHPHMPFQKPKWPLPPLFTGTKNDEAGSSSKNSENHEVGMRSQSANKEDGCINVYSSDVEATSNGEKQKSNKSLKRTRNSHQGRLSSPADGNRESVETVLMKFDALKRRLAQIEEAKEGMSRRADLKAGTLMMTEGHRTNLRKRMGTVPGVEIGDVFYFRFEMCLVGLHAPTMAGIDYMNFKFDQEEEPVAVSIVSSGGYEDDVERGDVLIYSGQGGNSYKKDGKQVADQKLERGNLALERSLQRANEVRVIRGVKDVANPMGKVYIYDGLYKIQESWTEKGKSGCNVFKYKLLRVPGQPEAFVIWKSIQQWREKITSRPGVILQDLTSGAESIPIPLVNDIDDERGPSHFTYVTNLKYSKPVNSMEPSLGCKCPSGCLPGDLDCSCIRKNGGNLPYTATRVLVIRKPLIHECGPSCLCYPNCRNQVSQNGPKVHLEVFKTKDRGWGLRSWDPIRAGTFICEYAGQIIIDKTEVEEDGDKDEEDEYIFDTTLTCDNSFEWNYIPELLEEERPADSNEAYKSPLPLIISAKNIGNVARFMNHSCSPNVFWQPVLHEHDNEAYPHIMFYAIKHIPPMTELTYDYCAHRRRKKCLCGSSKCRGSFG 683
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00135 683 MobiDBLite consensus disorder prediction 32 54 - -
Eupl1g00135 683 Pfam Pre-SET motif 409 505 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl1g00135 683 Gene3D SET domain 397 682 IPR046341 -
Eupl1g00135 683 MobiDBLite consensus disorder prediction 69 176 - -
Eupl1g00135 683 MobiDBLite consensus disorder prediction 102 148 - -
Eupl1g00135 683 Pfam SET domain 525 662 IPR001214 GO:0005515(InterPro)
Eupl1g00135 683 SUPERFAMILY SET domain 413 680 IPR046341 -
Eupl1g00135 683 ProSiteProfiles Pre-SET domain profile. 450 511 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl1g00135 683 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 209 394 - -
Eupl1g00135 683 SMART set-7 514 669 IPR001214 GO:0005515(InterPro)
Eupl1g00135 683 ProSiteProfiles YDG domain profile. 226 375 IPR003105 -
Eupl1g00135 683 SUPERFAMILY PUA domain-like 208 397 IPR015947 -
Eupl1g00135 683 SMART G9a-1 221 379 IPR003105 -
Eupl1g00135 683 ProSiteProfiles Post-SET domain profile. 667 683 IPR003616 -
Eupl1g00135 683 Coils Coil 176 203 - -
Eupl1g00135 683 SMART preset-2 404 498 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl1g00135 683 Gene3D - 209 396 IPR036987 -
Eupl1g00135 683 ProSiteProfiles SET domain profile. 514 663 IPR001214 GO:0005515(InterPro)
Eupl1g00135 683 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 68 680 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Eupl1g00135 683 MobiDBLite consensus disorder prediction 1 54 - -
Eupl1g00135 683 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 89 683 IPR025794 GO:0042054(InterPro)
Eupl1g00135 683 Pfam SAD-SRA domain 225 379 IPR003105 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00135 K24405 [histone H3]-lysine9 N-dimethyltransferase [EC:2.1.1.368]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr12:16052387 Eupl1g00135 Eupl-Chr1:4467302 dispersed
Eupl Eupl-Chr13:2040311 Eupl1g00135 Eupl-Chr1:4467302 dispersed
Eupl Eupl-Chr1:4467302 Eupl4g00132 Eupl-Chr4:2254551 dispersed
Eupl Eupl-Chr8:25329214 Eupl1g00135 Eupl-Chr1:4467302 transposed
Eupl Eupl-Chr1:4467302 Eupl5g00200 Eupl-Chr5:5361135 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl1g00135 . 1 669 Su(var)3-9 homologs gene family AT1G73100 50.213 0.0 654.0
Eupl8g00895 . 155 669 Su(var)3-9 homologs gene family AT5G04940 39.587 4.68e-114 367.0
Eupl12g00452 . 559 665 Su(var)3-9 homologs gene family AT1G73100 35.455 8.84e-12 59.7
Eupl12g00407 . 155 641 Su(var)3-9 homologs gene family AT5G04940 42.2 7.73e-113 352.0
Eupl5g00200 . 11 669 Su(var)3-9 homologs gene family AT1G73100 48.874 0.0 668.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SAD_SRA 3e-56 CL0178 TR SET