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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00136 ATGCAACCCCTCAAAGCCCCTGGGCCAGACGGCCTTCAGACCTTCTTTTTCCAAAACTATTGGGAGACCATGGGCAAGAGTCTGATCGATATGGTGCAAAACTTCTTCGACTCAAGCCACCTCCTCAAAGAAATAAACAAAACTTTCATCACCCTTATTCCCAAAACCCAATCCCCAAAGAATGCTCACCATTTCAGACCTATCAGCCTTTGCAACGTCTCCTACAAGGTTATGTCTAGAATCATTGTGAATAGGCTGAGACCTATCATACACAGCATGATCTCTCCTTTTCAAGGGGCTTTCGTGGCCAACAAACAAATCTCCGACAACATCCTCATAGCTCACAAAATTGTGAATACTTTCAAAAGCAAAAAAGGGAGCTACAGGATGGATGGGCATCAAACTTGA 408 44.12 MQPLKAPGPDGLQTFFFQNYWETMGKSLIDMVQNFFDSSHLLKEINKTFITLIPKTQSPKNAHHFRPISLCNVSYKVMSRIIVNRLRPIIHSMISPFQGAFVANKQISDNILIAHKIVNTFKSKKGSYRMDGHQT 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00136 135 PANTHER NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED 3 128 IPR052343 -
Eupl1g00136 135 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 59 126 IPR000477 -
Eupl1g00136 135 SUPERFAMILY DNA-RNA polymerases 5 110 IPR043502 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00136 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:4485688 Eupl1g00413 Eupl-Chr1:17205213 dispersed
Eupl Eupl-Chr1:4485688 Eupl14g01095 Eupl-Chr14:19971754 transposed
Eupl Eupl-Chr1:4485688 Eupl14g01132 Eupl-Chr14:22439030 transposed