AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00152 ATGGCTTCTTCTGAGAACTTGGCGAGTCTCGAGCAATGGGCGTTCCGTCCGAGCTTCGTTGACCCATGGTTCACCGACGCCTTCGCTCGCGATACCGAAACTCTTACAAAAGCTCTCCAGAAATCTCTCTCCAGCGAATCCGAAACCCTAACCGGTACCAACAGCCCTCAGTTTCTCCACCTCGTCAAGCCCGAACAGGTACCAACCGGCTCGGGTTCGGATCCGGAAACGGCATCGAAACGCCGGAACCCGATCTCCAACGGCAAGATCTCGAAGCGCAAGTCACGAGCGACGAAGCGATCTCCTACCACCTTCATAACGGCTGATCCTTCCAACTTCCGTCAGATGGTGCAGCAGGTAACCGGAATCAGATTCGGTAACTCCCACGTGCCGGTCGCTCCCGTTTTGAAGCCGGAGCCCCAGCGACCGGGTAACCGGTTCCAGAACTGCTGCTTGCCAACGCTGGACACATCAGCCTTCTTGTTGGAAAGCCACAACCCCCACCAGCAGGTGATGGGCCCCATCACAACTCCTCAGGCGCATCTCTCGTTTGCGCCGGTGGCGGAAGGTGGTGCAGGTTTAGATTTCGATACGTTCCAGAGCTTCCCGACTCTGGAGTCGTGGAGAGTAATGTAA 636 56.76 MASSENLASLEQWAFRPSFVDPWFTDAFARDTETLTKALQKSLSSESETLTGTNSPQFLHLVKPEQVPTGSGSDPETASKRRNPISNGKISKRKSRATKRSPTTFITADPSNFRQMVQQVTGIRFGNSHVPVAPVLKPEPQRPGNRFQNCCLPTLDTSAFLLESHNPHQQVMGPITTPQAHLSFAPVAEGGAGLDFDTFQSFPTLESWRVM 211
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00152 211 MobiDBLite consensus disorder prediction 41 60 - -
Eupl1g00152 211 MobiDBLite consensus disorder prediction 41 108 - -
Eupl1g00152 211 Pfam VQ motif 100 123 IPR008889 -
Eupl1g00152 211 MobiDBLite consensus disorder prediction 70 85 - -
Eupl1g00152 211 PANTHER VQ MOTIF-CONTAINING PROTEIN 5 186 IPR039609 GO:0005516(PANTHER)|GO:0005634(PANTHER)|GO:0006970(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00152 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5079237 Eupl3g01418 Eupl-Chr3:40254737 dispersed
Eupl Eupl-Chr1:5079237 Eupl13g01697 Eupl-Chr13:35533872 transposed