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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00158 ATGACTGCTCAGACGCAAGAAGAGATACTAGCTGCTCTTCTCGAACAGCAAAAGATCGATCCTGATGAGCCTATTGTTGAAGATGAAGATGATGATGACGATGACGACGACGACGATGACAAGGATGATGATGAGGCTGAGGGACAACTAGAAGGAGATGCAAATGGTAGATCAAAGCAGAGTAGAAGCGAGAAGAAGAGTCGCAAGGCAATGTTGAAGCTTGGAATGAAACCCATCCCTGGTGTCAGCCGTGTTACTGTCAAGAAGAGCAAGAATATTTTGTTTGTGATCTCAAAACCGGATGTTTTCAAGAGCCCGACATCAGACACGTATGTTGTCTTTGGAGAGGCAAAGATTGAGGACTTGAGCTCGCAACTGCAGACTCAGGCTGCAGAGCAATTCAAGGCTCCTGATCTCAGTCATGTGATCTCCAAGCCTGAATCATCAGCCATGGTTCAGGATGATGAAGATGTCGACGAGACAGGGGTGGAACCAAAGGACATAGATTTGGTGATGACACAGGCCGGAGTCTCAAGATCGAAGGCGGTGACGGCACTCAAGGCCGTTGATGGGGACATAGTTACTGCCATCATGGAGCTAACAAACTAA 609 47.45 MTAQTQEEILAALLEQQKIDPDEPIVEDEDDDDDDDDDDDKDDDEAEGQLEGDANGRSKQSRSEKKSRKAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYVVFGEAKIEDLSSQLQTQAAEQFKAPDLSHVISKPESSAMVQDDEDVDETGVEPKDIDLVMTQAGVSRSKAVTALKAVDGDIVTAIMELTN 202
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00158 202 SMART NAC-2 64 120 IPR002715 -
Eupl1g00158 202 Gene3D - 70 123 IPR038187 -
Eupl1g00158 202 PANTHER NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED 4 201 IPR016641 GO:0005737(PANTHER)|GO:0005854(InterPro)|GO:0006612(PANTHER)|GO:0051082(PANTHER)
Eupl1g00158 202 CDD NAC-NACA 75 122 - -
Eupl1g00158 202 MobiDBLite consensus disorder prediction 57 71 - -
Eupl1g00158 202 Gene3D - 163 200 - -
Eupl1g00158 202 CDD UBA-NAC-euk 165 201 - -
Eupl1g00158 202 FunFam Nascent polypeptide-associated complex (NAC), alpha subunit 71 123 - -
Eupl1g00158 202 ProSiteProfiles NAC A-B domain profile. 61 126 IPR002715 -
Eupl1g00158 202 Pfam HYPK UBA domain 162 201 IPR044034 -
Eupl1g00158 202 Pfam NAC domain 64 119 IPR002715 -
Eupl1g00158 202 MobiDBLite consensus disorder prediction 22 49 - -
Eupl1g00158 202 MobiDBLite consensus disorder prediction 14 73 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00158 K03626 nascent polypeptide-associated complex subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:586088 Eupl1g00158 Eupl-Chr1:5201329 dispersed
Eupl Eupl-Chr1:5201329 Eupl8g00069 Eupl-Chr8:1649996 dispersed
Eupl Eupl-Chr1:5201329 Eupl5g00252 Eupl-Chr5:6925994 wgd