AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00159 ATGGGAGGAAGAACAGTAGTCTCTGACGAAGAAGATGAGGTTTTCGAAGAGGAGGAAGACGAGAGAGAAGTTCGTGATGCAGGTGCAGTAGATGTCACAAGGAGGGACGCGGACGAAGACGACGAAGAGGAAGATGAAGAGGGGCAAGATGAATACGAGAAGGATGGATTTATAGTGGACGATGCAGAGGAAGAGGAAGAAGAGCAGGATGAGGAAGAGAGGGTTAGCAGTGACGAGGAGAGGCAAAAAAAGAAAAAGAGGAAGAAAAGAGAGTCGGAAAAGAATTATGTTCTTGACGAAGATGACTATGAGTTGCTTCAGGACAACAACATTACGGGCTTCCGCCGCCCCAAACCTGGGAGCACGAAATTTAAGCGGCTGAAAAAAGCTGGGAGGGACAGCGAGCTGGAAGAGCAGTCTGGATTTTCTGATGAAAAGGAACTTGATCAAAGTGGGCGGAGTGGAAGGACTGCTGAGGAAAAGCTCAAGCGCAGTTTATTTGGTGACGACGAAGGGCCACCTCTTGAGGATATTGCTGAAGAGGAGGAACAGCCAGAGGAAGAAGAGGATGTGGATATTGGTGAAGAGGATGAGATGGCGGATTTTATTGTGGATGAAGAGGAAGTTGACGAGAATGGAGCCCCTGTGAGACGGAGGAAAGTGAAAAAAAAGAAGTCGAGGCAGGCCCCCGGAGTTTCATCATCTGCGCTGCAGGAAGCTCATGACATATTTGGTGATGTTGATGAACTCTTGATGCTTCGCAAGCAAGGCCTTGCAAAGAGTGGTAGGTCTGATGATTCCAGTGAGTGGAGAGAAAAGAGGCTCGAAGATGAATTTGATCCCTCCATTCTAACGGAGAAGTATATGACTGAGAAGGATGACAGGATTCGTGATATTGATGTGCCTGAGAGGATCCAGATGTCAGAGGCAAGCACCGGGCCTGCTCCAACTGACGAAATGAGTATAGAAGATGAGAGTACCTGGATCTATAACCAGATTGCTACTGTTGTGGTACCAATGTTCGGCAAGAAGAGTGTTAGTGATGGAGCTGACGAGGAAGATCAACTGTCAAAAAAAAGAAGGGAAGACATTGCAAGGTTCTTGGAGTTACTTCATCTGCAGAAACATGATATTCCTTTTATTGCTATGTATCGGAAGGAGTTGTGCCCTACCCTATTGAAAGACCCAGAGCAAGAAGAGACTGAAGCTGAGAAGACACCTACACTGAAGTGGCACAAGGTACTTTGGGCCATCAAGGACTTGGACAGAAAGTGGCTGCTGCTTCAAAAGCGGAAGAGTTCTCTTCAGTTATACTATAATAAGCGCTTCGAAGAAGAATCTCGAAGGATATATGATGAAACAAGGCTCACCTTGAATCAGCAGATTTTTGAATCAATTACTGAGTCTCTTAAGACTGCTGAATCAGAAAGAGAGGTTGATGATGTTGACTCAAAGTTCAATTTGCATTTCCCTTCAGGTGAAGTTGGTTTGGACGAAGGACAGTTTAAGAGGCCAAAGAGGAAATCACAATATAGTATCTGCAGTAAGGCTGGTCTATGGGAGGTCGCAGGCAAGCTTGGGCGTAACTCTGAGCACTTTGGATTGTTTTTGACTTTAGAAAGGGTGATTGATGAAGTGGAGGATGGCAAGGAAACTCCTGAGGAAATAGCTTCAAATTTTACATGCGCAATGTTTGAGACTCCTCAAGTTGTGCTAAAAGGTGCTAGGCACATGGCAGCGGTTGAGATCAGCTGTGAGCCACGTGTGAGGAAACATGTTCGAACTATCTTTATGGACAATGCTGTAGTCTCAACAAGTCCGACCCCTGATGGAAATTTGGTTATAGATTCTTTTCATCAGTTTGCAGGAGTAAAGTGGCTACATGGCAAACCACTAACCAAATTCGAAGATGCGCAGTGGCTTCTTATTCAAAAGGCTGAAGAAGAGAAGCTTCTTCAAGTTACTATAAAATTGCCAGAACGTATTCTAAATGAATTAATAAGTGATTCTAATGATAATTATCTCAGTATTGGTGTTAGTAAACCTGCCCAAGTTTGGAATGAGCAACGCAAATTAATACTGCAGGATGCCCTTTTTAATTTTCTCCTTCCTTCAATGGAAAAGGAAGTTCGATCTGTATTGACTGCCAAAGCGAAGAACTGGCTACTTATGGAATATGGCAAGCAATTGTGGAAGAAGGTCTCTGTTGCACCGTATCAGTGGAAGGAAAACGATGCAGTCTCAGATGATGAAACTGCACCAAGAGTTCTGGCTTGCTGTTGGGGCCCTGGGAAGCCAGCAACGACTTTTGTGATGTTGGATTCATGTGGAGAAGTGTTGGATGTGTTGTACACAAGTTCCCTCAGCATTCAGTCCAAGAGTGCTAATAACCAGCAAAGCAAGAAAAATGACCAGGAACGTGTCCTGAAGTTCATGACAGACCATCAACCGCATGTTGTTGTTCTAGGAGCTGTGAATTTGTCTTGTACACGGTTGAAGGAAGAACTTTTCGAGATCATCTTTAAGATGGTGGAGGAACATCCTAGAGATATTGGTCAGGATATGGGTGAGTTAAGCGTTGTTTATGGGGATGAATCCCTGCCTCGTCTCTATGAAAATTCACGGATTTCTTCCGACCAGCTACCTGGACAGCCAGGTATTGTTAAGCGGGCTGTGGCTCTTGGTCGTTACCTTCAAAATCCTTTGGCCATGGTTGCATTACTATGTGGACCAGGGAGGGAGATAATATCCTGGAAGCTCGGCTCTTTAGAGCATTTTCTTACTCCTGATGAGAAGTATGGGATGGTTGAACAGGTGATGGTAGATGTTACGAACCAAGTAGGTGTTGACATAAATTTGGCTGCAAGCCATGAATGGCTCTTCGCTCCTTTACAATTTGTTTCGGGGCTTGGACCCAGAAAAGCAGCTTCTTTACAAAGGTCATTAGTAAGAGCTGGATCAATTTTCACTCGAAAGGATCTTGCGCCAAGTCTTAAAAAGAAGGTGTTTATTGATGCGGTCAGTTTCTTGCGTGTCCGTCGGAGTGGGCTGGCGACTAACAGCTCCCATATTATAGATTTGTTGGATGATACAAGAATTCATCCTGAGTCTTATAAACTCGCGAAGAATATGGCCAAGGATGTCTTTGATGAAGATCCTCAAGAGGATTCATATGACACAGACGATGATGCACAGGAGATGGCAATAGAACATGTTAGGGAGAAGCCGAACTTTTTAAAAGCCCTAGATATCAACGAATATGCTGCAAGTCTTGAGGAACAGCTCAAGCTTAAGACTAATAAAAGAGAGACTCTTGCTGATATAAAGATGGAATTGCTACACGGATTTCAAGACTGGCGTAGTCCTTACAGAGAACCAGATCAGAATGAGGAGTTCTATATGATATCTGGTGAAACTGAGGATACCATTGCTGAAGGAAGAATTGTGCAGGCAACAGTTCGCTGGGTGCGATCTGATCGAGCCAGCTGTATGCTTGAATCTGGTTTGAATGGGGTGCTTATGAGTGAAGAATATACAGATGAGAAGAGATCAATTGATTTAACTGAAGAGTTTCGTGAAGGCGATATTCTTACCTGCAAGATTAGATCAATTCAAAAAAACAGATACCAGGTGTTTCTAACGTGTAAAGAAAGTGAATTAAAGAGGGAACGGTATCAAAGTCCTCGAAACCTTGATCACTACTACAAGGCAGATGAAAATAGTCTACAGAGTGATCAAGAGAAAGCTCGCAAGGAGAAGGAGCTTGCAAAGAAGCATTTTAAGCCAAGAATGATTGTTCATCCCCGTTTCCAAAATATAACAGCCGACGAAGCAATTGAGTTTCTCACAGACAAGGAAGCGGGCGAAAGTATTATTCGTCCCAGCTCTAGAGGACCATCTTATTTGACTTTAACTCTAAAAGTTTATGATGGAGTTTATGCTCACAAAGACATAATTGAAGGCGGAAAGGATCACAAGGATGTATCGAGCTTGCTTCGTCTCGGAAAATCATTAAAATTAGGAGAAGACACTTTTGAGGATTTAGATGAGGTTATGGATCGATATGTGGACCCATTGGTAGCCCAGCTGAAGGCTATGCTTAACTACCGCAAATTCAAGAGGGGCTCAAAAGCTGAAGTTGATGATCATCTAAGAGTGGAGAAATCAGAGTGCCCAACGAGGATAGTTTACTGTTTTGGCATTTCTCATGAACATCCTGGAATTTTCATTTTATCTTATATACGAAGTACAAATCCACACCACGAGTACATTGGCATGTATCCCAAGGGCTTCAAATTTCGGAAACGGACATTTGAGGACATTGACCGGCTTGTGGCATATTTTCAGAAACATATTGATGATCTGCAGCATGATTCAGTGCCATCAATCCGGTCAGTTGCAGCTATGGTACCTATGAAAAGCCCTGCAACTGAGGGTTCCTCTGGTGGGGCATCTATAGGCAGTGGGTGGGGTGGCTCGACAGCAAACAATGACGATAGCAGTTGGAGAGACCAGTTGAATTTGGACAGAGAGAGATCTTCTACACCGGGCTCAAGAACAGGCAGAAATGACTACAGAAATGGTGGTGGTCGTGACAGGCACCCGAGTGGGCTGCCAAGGCCATATGGTGGGCGTGGTAACGGGCGTGGCTCGTATAATGATAGAAAAAACACCAGTAGCAATGAAAGACAAGATTCTGGTTACCATTCTTCTAAATGGGGTTCGGGTTGGGGACCCAAGGATGGGAATGATGGGTGGAGCAACTTTCCTGGTGCTAAAGTTCAGAATTCACCAGGCAGAGAAGCTTTCCCTGGTGGTTGGGGCAGTAGCGGAAGTGGTGTTGGTGGTAGTAGTGGAGGTGGTGGCGGTAGTGGCAGTGGTGGGGGTTGGGATTCGTCTAGATCGAAAGATGCCGATGCAATGAACACCGGTTCCGAAATTGGGAAATCTGCTTGGGGTGCTTCCCCCAAGGGAAGTGGTTTGGCTTGGCCAGAAGCTAAAAAAGGGTCCTCAGGAAGTGGTGGCGGCGGCGGCGATGGCGATGGATGGGGTGGTGGTGGTTGGTGA 5067 44.86 MGGRTVVSDEEDEVFEEEEDEREVRDAGAVDVTRRDADEDDEEEDEEGQDEYEKDGFIVDDAEEEEEEQDEEERVSSDEERQKKKKRKKRESEKNYVLDEDDYELLQDNNITGFRRPKPGSTKFKRLKKAGRDSELEEQSGFSDEKELDQSGRSGRTAEEKLKRSLFGDDEGPPLEDIAEEEEQPEEEEDVDIGEEDEMADFIVDEEEVDENGAPVRRRKVKKKKSRQAPGVSSSALQEAHDIFGDVDELLMLRKQGLAKSGRSDDSSEWREKRLEDEFDPSILTEKYMTEKDDRIRDIDVPERIQMSEASTGPAPTDEMSIEDESTWIYNQIATVVVPMFGKKSVSDGADEEDQLSKKRREDIARFLELLHLQKHDIPFIAMYRKELCPTLLKDPEQEETEAEKTPTLKWHKVLWAIKDLDRKWLLLQKRKSSLQLYYNKRFEEESRRIYDETRLTLNQQIFESITESLKTAESEREVDDVDSKFNLHFPSGEVGLDEGQFKRPKRKSQYSICSKAGLWEVAGKLGRNSEHFGLFLTLERVIDEVEDGKETPEEIASNFTCAMFETPQVVLKGARHMAAVEISCEPRVRKHVRTIFMDNAVVSTSPTPDGNLVIDSFHQFAGVKWLHGKPLTKFEDAQWLLIQKAEEEKLLQVTIKLPERILNELISDSNDNYLSIGVSKPAQVWNEQRKLILQDALFNFLLPSMEKEVRSVLTAKAKNWLLMEYGKQLWKKVSVAPYQWKENDAVSDDETAPRVLACCWGPGKPATTFVMLDSCGEVLDVLYTSSLSIQSKSANNQQSKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEELFEIIFKMVEEHPRDIGQDMGELSVVYGDESLPRLYENSRISSDQLPGQPGIVKRAVALGRYLQNPLAMVALLCGPGREIISWKLGSLEHFLTPDEKYGMVEQVMVDVTNQVGVDINLAASHEWLFAPLQFVSGLGPRKAASLQRSLVRAGSIFTRKDLAPSLKKKVFIDAVSFLRVRRSGLATNSSHIIDLLDDTRIHPESYKLAKNMAKDVFDEDPQEDSYDTDDDAQEMAIEHVREKPNFLKALDINEYAASLEEQLKLKTNKRETLADIKMELLHGFQDWRSPYREPDQNEEFYMISGETEDTIAEGRIVQATVRWVRSDRASCMLESGLNGVLMSEEYTDEKRSIDLTEEFREGDILTCKIRSIQKNRYQVFLTCKESELKRERYQSPRNLDHYYKADENSLQSDQEKARKEKELAKKHFKPRMIVHPRFQNITADEAIEFLTDKEAGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIIEGGKDHKDVSSLLRLGKSLKLGEDTFEDLDEVMDRYVDPLVAQLKAMLNYRKFKRGSKAEVDDHLRVEKSECPTRIVYCFGISHEHPGIFILSYIRSTNPHHEYIGMYPKGFKFRKRTFEDIDRLVAYFQKHIDDLQHDSVPSIRSVAAMVPMKSPATEGSSGGASIGSGWGGSTANNDDSSWRDQLNLDRERSSTPGSRTGRNDYRNGGGRDRHPSGLPRPYGGRGNGRGSYNDRKNTSSNERQDSGYHSSKWGSGWGPKDGNDGWSNFPGAKVQNSPGREAFPGGWGSSGSGVGGSSGGGGGSGSGGGWDSSRSKDADAMNTGSEIGKSAWGASPKGSGLAWPEAKKGSSGSGGGGGDGDGWGGGGW 1688
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00159 1688 Gene3D - 1139 1225 IPR012340 -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 126 171 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 36 75 - -
Eupl1g00159 1688 Gene3D - 1021 1119 IPR042066 -
Eupl1g00159 1688 FunFam Transcription elongation factor spt6 1365 1456 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 10 24 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 76 101 - -
Eupl1g00159 1688 ProSiteProfiles S1 domain profile. 1146 1216 IPR003029 GO:0003676(InterPro)
Eupl1g00159 1688 PIRSF Spt6 4 1527 IPR017072 GO:0140673(InterPro)
Eupl1g00159 1688 Pfam SH2 domain 1240 1451 IPR035420 -
Eupl1g00159 1688 FunFam Transcription elongation factor Spt6 1019 1119 - -
Eupl1g00159 1688 SMART rnase-8s 754 872 IPR006641 GO:0006139(InterPro)
Eupl1g00159 1688 SUPERFAMILY SH2 domain 1402 1455 IPR036860 -
Eupl1g00159 1688 FunFam Transcription elongation factor spt6 744 908 - -
Eupl1g00159 1688 SUPERFAMILY SH2 domain 1270 1356 IPR036860 -
Eupl1g00159 1688 Gene3D SH2 domain 1365 1460 IPR036860 -
Eupl1g00159 1688 Pfam Holliday-junction resolvase-like of SPT6 752 909 IPR028231 -
Eupl1g00159 1688 Gene3D - 744 1138 IPR037027 GO:0006139(InterPro)
Eupl1g00159 1688 FunFam Transcription elongation factor spt6 501 766 - -
Eupl1g00159 1688 Pfam Helix-hairpin-helix motif 913 1012 IPR032706 -
Eupl1g00159 1688 Gene3D - 312 509 IPR023319 -
Eupl1g00159 1688 Coils Coil 62 82 - -
Eupl1g00159 1688 Gene3D - 510 947 IPR023323 -
Eupl1g00159 1688 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 11 1528 IPR017072 GO:0006368(PANTHER)|GO:0008023(PANTHER)|GO:0031491(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140673(InterPro)
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 1473 1688 - -
Eupl1g00159 1688 SUPERFAMILY RuvA domain 2-like 924 1013 IPR010994 -
Eupl1g00159 1688 Gene3D SH2 domain 1253 1364 IPR036860 -
Eupl1g00159 1688 SMART S1-6 1144 1216 IPR003029 GO:0003676(InterPro)
Eupl1g00159 1688 FunFam Transcription elongation factor spt6 312 498 - -
Eupl1g00159 1688 Pfam Acidic N-terminal SPT6 38 133 IPR028083 -
Eupl1g00159 1688 SUPERFAMILY RuvA domain 2-like 1026 1121 IPR010994 -
Eupl1g00159 1688 CDD SH2-Cterm-SPT6-like 1366 1452 IPR035018 -
Eupl1g00159 1688 Pfam Spt6, S1-OB domain 1132 1218 IPR049540 -
Eupl1g00159 1688 SUPERFAMILY Nucleic acid-binding proteins 1141 1221 IPR012340 -
Eupl1g00159 1688 FunFam Transcription elongation factor spt6 1253 1364 - -
Eupl1g00159 1688 Pfam HHH domain 1027 1049 IPR041692 -
Eupl1g00159 1688 Gene3D - 279 1015 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 1 237 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 173 209 - -
Eupl1g00159 1688 MobiDBLite consensus disorder prediction 1478 1502 - -
Eupl1g00159 1688 Pfam Tex central region-like 550 719 - -
Eupl1g00159 1688 CDD SH2-Nterm-SPT6-like 1267 1355 IPR035019 -
Eupl1g00159 1688 SUPERFAMILY Ribonuclease H-like 754 909 IPR012337 -
Eupl1g00159 1688 SUPERFAMILY Tex N-terminal region-like 360 734 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00159 K11292 transcription elongation factor SPT6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5211018 Eupl5g00253 Eupl-Chr5:6962162 wgd