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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00169 ATGGCTGATGCTATGGAACCAGGAAGGGTGACGTTTGAAGAGAAGATGGTCATTAGGAAGGCAATTGAAGATGCGGGAATACCTTTAACCTACGTCTCAGCAAACTGCTTCGCCGGATACTTCATCGGCGATCTATGTCAACCGGGTAGGATCACTCCTTCGACGGAGAGCGTGGTCTTGTTGGGAGATGGCAACCAAAAAGCAATTTCTCTGGACGAGGACAACATTGCCACGTACACCATTAAAACCATCAATGATCCTCGTATACTCAACAAAACGCTTTACCTCAGGCCACTAGAAAACATCCTCTCGCAAAGAGAAGTAGTCAAAATATGGGAGAAAGTCATTGTAGAAGTACTAGACAAGTCCACCATCACAAAGGATTAA 387 45.22 MADAMEPGRVTFEEKMVIRKAIEDAGIPLTYVSANCFAGYFIGDLCQPGRITPSTESVVLLGDGNQKAISLDEDNIATYTIKTINDPRILNKTLYLRPLENILSQREVVKIWEKVIVEVLDKSTITKD 128
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00169 128 PANTHER PINORESINOL REDUCTASE-RELATED 3 127 IPR050608 -
Eupl1g00169 128 Gene3D - 34 127 - -
Eupl1g00169 128 Pfam NmrA-like family 4 116 IPR008030 -
Eupl1g00169 128 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 116 IPR036291 -
Eupl1g00169 128 Gene3D - 3 95 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00169 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5471576 Eupl3g01933 Eupl-Chr3:47964616 dispersed
Eupl Eupl-Chr1:5440039 Eupl1g00169 Eupl-Chr1:5471576 tandem