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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00170 ATGAAATTCAATAGCTTTAATTGTTACAACTACAACAACAACAAGTTGGGACCGTCGCGTGGTTTGTTGTTAGGTTTTCTTGTGGTTCTGGTCTGTTGTGTGTTCTGCGAAGTTGGGTTTTCCGGAAGCGCCGACGATTTGTTAAAGATGGCTAACCTTCCAGGAGGGATTCGTGATTCTGATGGAGTTCAGAACAGTGCTGAGATCGAAAGTCTCGCCAAATTTGCTGTGGAAGAACACAACAAGAAAGAGAACACGCTACTCGAGTTTGCAAGGGTGGTGAAGGCAAAGGAGCAGGTGGTGAGTGGTACGCTGTACTATCTTACTCTGGAGGTCATCGATGCAGGTGAGAAAAAGATCTACGAAGCAAAGGTCTGGGTGAAGCCATGGATGAACTTCAAGGAGTTGCAGGAATTCAAGCCCGTTGCTGATGCCTCCGCCTCATTTACCCCTTCGGATCTCGGGGCTAAGCAAGGTGATTGA 483 47.2 MKFNSFNCYNYNNNKLGPSRGLLLGFLVVLVCCVFCEVGFSGSADDLLKMANLPGGIRDSDGVQNSAEIESLAKFAVEEHNKKENTLLEFARVVKAKEQVVSGTLYYLTLEVIDAGEKKIYEAKVWVKPWMNFKELQEFKPVADASASFTPSDLGAKQGD 160
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00170 160 ProSitePatterns Cysteine proteases inhibitors signature. 98 111 IPR018073 -
Eupl1g00170 160 PANTHER CYSTATIN FAMILY MEMBER 29 149 IPR027214 GO:0004869(InterPro)|GO:0004869(PANTHER)
Eupl1g00170 160 FunFam Cysteine proteinase inhibitor 50 149 - -
Eupl1g00170 160 SUPERFAMILY Cystatin-monellin 57 144 IPR046350 -
Eupl1g00170 160 CDD CY 55 141 IPR000010 GO:0004869(InterPro)
Eupl1g00170 160 Gene3D - 50 150 - -
Eupl1g00170 160 SMART CY-4 52 142 IPR000010 GO:0004869(InterPro)
Eupl1g00170 160 Pfam Aspartic acid proteinase inhibitor 67 142 IPR000010 GO:0004869(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00170 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5586690 Eupl5g00287 Eupl-Chr5:8615162 wgd