AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl1g00194 ATGGATTCTCCTCCACCGGCCCACGATAGCTTCACCCAGAAGGAAAAAGAGGGCTCAGCTTCTCCCGTCGATCCTTTCTTGAAGGAGGCTCTCCAGAATCCTCGCCATCGTCTCACCATTCTGCGAATGGAGTTGGATATTCAGAAGTTCATGCAGAACCCTGATCAACAGCAGTTTGAGTTTCCGCATTTCCCTACTTCGTACCTTCGGCTTGCCGCTCACCGTGTTGCTCAACACTATGGGCTGCAGTCTATGGTACTGGATAACATTGTGGATGGCTTGGGAACAAAGATAATAGTCAGAAAAACAATTGAAAGCAGATACCCTACTGTCTGTTTATCGGATGTTCCTACAAAACAGCCGGAAAATGATATACCTGAACAGGTTAAGATTGCCATCAGGCCAAGGCCACACAGATCTTCCTCAAATGATGCGAACGAACTGGGAATCAAACGTAGTTCAGCAAGAACTGTGGAAGAGAGGAAAGAGGAGTATGACAGAGCACGGGCTCGCATCTTCAGTAGCTCCAGCAGTCCCGACTTGGAAGGTTCATCTTCTCAGGCTGCACTCGACGGAAGAAGTTTATGTTTGAGCAGAGATGAGATTGAAGGTTGCAAGAATGCTGTTGATGAGCCAGAGAAGACTCCTATCACCAGGGATGGTAGTACTTCTTCCAGAGTTGCAATTCTTAGAGACAGAGAGAAGGACCGCATTGACCCAGACTATGACCGGAGTTATGAAAGGTATGTTAGGGGCCTCTCTCCTAATCAGAACTTTAGCTTGGGGCCGTTCAACATGCAGAGCTTTCAACCTTCATTCGTGCATTATGAAACTGGTATTCATCAGCTGAGTCAGTTGCCGAGGACCCAATCATCCCTCACTTATAGGCCTTCTTCGAGTCCGATTATGAGTCCTTATTGCGCTGTTGGTATGAATCAGTCATCTGGGGATGCCGTCTATATGCAGTGGCCTAGTCCTGCTATGATGTACGCGCAATCATATGAGCAATTTAGACATGCTATTGTCCAGGCTCCTTTCTATCAGCAACCTCTCAGCTTTGATTACTCGCAAAACCATTAG 1080 47.13 MDSPPPAHDSFTQKEKEGSASPVDPFLKEALQNPRHRLTILRMELDIQKFMQNPDQQQFEFPHFPTSYLRLAAHRVAQHYGLQSMVLDNIVDGLGTKIIVRKTIESRYPTVCLSDVPTKQPENDIPEQVKIAIRPRPHRSSSNDANELGIKRSSARTVEERKEEYDRARARIFSSSSSPDLEGSSSQAALDGRSLCLSRDEIEGCKNAVDEPEKTPITRDGSTSSRVAILRDREKDRIDPDYDRSYERYVRGLSPNQNFSLGPFNMQSFQPSFVHYETGIHQLSQLPRTQSSLTYRPSSSPIMSPYCAVGMNQSSGDAVYMQWPSPAMMYAQSYEQFRHAIVQAPFYQQPLSFDYSQNH 359
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl1g00194 359 MobiDBLite consensus disorder prediction 1 24 - -
Eupl1g00194 359 ProSiteProfiles SUZ domain profile. 107 177 IPR024771 -
Eupl1g00194 359 Pfam R3H domain 39 85 IPR001374 GO:0003676(InterPro)
Eupl1g00194 359 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 14 349 IPR051937 -
Eupl1g00194 359 SMART R3H-4 21 103 IPR001374 GO:0003676(InterPro)
Eupl1g00194 359 Pfam SUZ domain 128 176 IPR024771 -
Eupl1g00194 359 CDD R3H-encore-like 36 103 - -
Eupl1g00194 359 SUPERFAMILY R3H domain 20 128 IPR036867 GO:0003676(InterPro)
Eupl1g00194 359 ProSiteProfiles R3H domain profile. 37 106 IPR001374 GO:0003676(InterPro)
Eupl1g00194 359 MobiDBLite consensus disorder prediction 135 162 - -
Eupl1g00194 359 Gene3D - 10 135 IPR036867 GO:0003676(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl1g00194 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:6164747 Eupl5g01172 Eupl-Chr5:33946607 dispersed