AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00065 ATGTCAGCTTCGACTGTCGGAATCAGTACGAATCCTTCGTTGGCTTTGGGTTCTAAGACCAATGCCAGAAGGAGAGCTGTTTCTGTCACGGAGAAGAAATCTTTCAATGAAGCAGTCGCAGAAGGTGGTGGAGTTTCCGAAGCAGCGGACGCTGACGGGAAAGATATCAGCCACTCGATTAAGGGGGAGATGGTTCTTGAGAAACAGAAAGAAGTATCTTTACAAGTAAAGAAAGCCCTGATCAATTCTTCCATTTCGCCTCGGCGCAGGAAGGCCGTCGTTTCTAAATCGGAGAAGAAACCGACTTGGCGAACCGTACTTAGTGTTTTCACGAAGAATTTCTTGCTCCTCCTTATATTTCTAGTGCTGGTGCTGCTATTTAGGAAATTCGCTCTCAACTCTGACTCTGGGGATGGCACTGTTTCTCCTATGGGCATTTTGGATTTTGAGGGTCGGATTGCAGAAGTCGAAGCGCTTTTAAAGAAGACGACAAAGATAATGCAGGCTCAGGTTGAGGTCGTGGATAGGAAGATCGAGAGTCAGGTCGGGGGTTTGAGAAGGGAATTCTCGAAGCAAGTTGAAGAGAAAGGCATGCTGTTCGAGGACGTGGTGAACAGATTGGAGGTCAGAACTGATGGTTTGGATAAGACTTTGGGTGAGTTGAGGACTACCAGTTTCTTTACTGAGGAAGATTTCAAGAGTTTTTCAGATGAGTGGAAGAAGAGTAGAAGCCTCGAGGACGGTGTTAAAGATTTGAGCTTGGATGAGATTAGGGCTGTTGCAAGGGAGATTGTCGAGAAGGAGATTGAAAAGCATGCAGCGGATGGGCTTGGTAGGGTCGACTATGCATTGGCTTCCGGTGGGGCCATGGTAGTTGATCATTCGGATCCTTATTATGTTGAGAAGGGTGCTAGTTGGTCTGTTTTGTCTAAGTGGCGAAATCAGGTCCATGTTGATGCACAAAAGATGTTGCAACCGAGTTTTGGAATGCCTGGTGATTGTTTTCCTCTCAGAGGAAGCAATGGGTTTGTGAATATCAGGCTCAGGGCAGCAATCATTCCGGAGGCCGTTACCTTGGAACATGTTGCAAGGAGTGTAGCCTACGACAGGACGAGTGCTCCAAAGAACTGTCGGGTCTTGGGTTGGTTTCAAGGGCACAATGCCCATCCATCTAGCCAGCCCAAGAAAGTTTTGCTGGGTGATTTTGTTTACGACCTTGAGAGAAGCAATGCTCAGACCTTCAATGTGGAGTCGGCAGATTCAGGCATTGTCAACATGGTCAGGTTCGAATTCACTTCCAACCATGGAAGCCCCAAGCACACGTGCATCTATCGCCTGAGGGTGCACGGCCAAGAACCCGACTCAGTAGAGATGTTAGAAGTGCAGTCTTGA 1392 47.7 MSASTVGISTNPSLALGSKTNARRRAVSVTEKKSFNEAVAEGGGVSEAADADGKDISHSIKGEMVLEKQKEVSLQVKKALINSSISPRRRKAVVSKSEKKPTWRTVLSVFTKNFLLLLIFLVLVLLFRKFALNSDSGDGTVSPMGILDFEGRIAEVEALLKKTTKIMQAQVEVVDRKIESQVGGLRREFSKQVEEKGMLFEDVVNRLEVRTDGLDKTLGELRTTSFFTEEDFKSFSDEWKKSRSLEDGVKDLSLDEIRAVAREIVEKEIEKHAADGLGRVDYALASGGAMVVDHSDPYYVEKGASWSVLSKWRNQVHVDAQKMLQPSFGMPGDCFPLRGSNGFVNIRLRAAIIPEAVTLEHVARSVAYDRTSAPKNCRVLGWFQGHNAHPSSQPKKVLLGDFVYDLERSNAQTFNVESADSGIVNMVRFEFTSNHGSPKHTCIYRLRVHGQEPDSVEMLEVQS 463
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00065 463 ProSiteProfiles SUN domain profile. 287 453 IPR012919 -
Eupl5g00065 463 Pfam Sad1 - UNC-like C-terminal 319 451 IPR012919 -
Eupl5g00065 463 Gene3D - 257 452 - -
Eupl5g00065 463 PANTHER SAD1-UNC-84-LIKE PROTEIN-RELATED 78 450 IPR045119 GO:0005635(PANTHER)|GO:0043495(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00065 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2214720 Eupl Eupl1g00035 Eupl-Chr1:1204278 Eupl5g00065 Eupl-Chr5:1351057