AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00083 ATGGTGTCAGAGCCAAGCTCTCTATATCCTTCATCTTCTAAAACAACCGAGATGGATTCTTCAGGTTTAAGGCCCTTGTCCACCATTAAAGAGAGTGTCGAGCTCAAATACATTAAGAACAAGTGCGAGTCATGGACTGGAGGTCTCCAGAGAATACTATGTATGCAAGGCGGAGATGATGACGGTAGCTACGCAAAGAATTCGGATGCCCCAGCATCAGCAATCACCTTATCAAAGCCGTTGCTCGTAGCAGCGATTCAATCCATGAAGTTGTTCGAAGGAGAGGAGTCATTAAGGATTGCAGACTTAGGTTGTGCCACCGGATACAACACGTTGGCCACGGTCGACTTGGTGGTGGAGAACTTGAGGGGAAGGTATAACCAAGAGTGTGGTTTCGAGCCTGAATTCGAGGCCTTCTTCTCTGATCTACCTTCAAATGATTTCAATTCTCTCTTCCGATCATTGCCCCCATTTACCAATAGCAAGGAACAGAAGTACTATGCAGCCGGAGTGCCGGGGTCGTTCTACAACCGCCTCTTCCCTAAGGGGAAGCTTCATGTTGCAGTTTGCTTAAGTGCCTTACACTGGCTTTCTCAGATACCGGAAACAGTGTTGGATAAGAGATCACCAGCTTGGAACAAAGGAAGAGCTTGGATTGACCGAGCGAAGGAGGAGGTCGTTGAAGCCTATGAGAAGCAATCCAAGGAGGATTTAGAAGCCTTCTTACGATGTCGAAAGGAGGAAATTGTAGAGGGAGGAATGTTGTTTATATTGATGGCTGGGAGGTCTAGTTCGCAGCGACCGGAAAACCAGTTAGGTGACCCTGACTCAAGGACCAAGCACCCTTTCACTACCTCCATGGATCAGGCATGGGAAGACCTGTTAAATGAGGGATTGATCGACCAAGAGACAAGAGACACGTTCAACATCCCTGCATACATGAGAAGCACAGATGAGGTAGAGAAGGCATTTCACCAAAGTAGTGGGTTTGAGATACAAAGACTTGAGTATCTGAGAATCCCTGAACATTCAAAGGAGAAGCAAGAAGAATGGATTAGAGATCCGGTTTCCTATGGTAGAGCCAAAGCCAACCTGGTCCGTGCAACACTCAAGCCCATGGTTGAGGCCCACCTTGGGCCCAAGCTCTCTGAGGAGTTGTTCAAGCGATTCGAGAAGAGAGTTTCTGGGGACATGGCCATGCTTCATAAGACATGCTTTTATGGTGTTATTGTTGTGTCTGCAATTAGGAAGTGA 1254 47.29 MVSEPSSLYPSSSKTTEMDSSGLRPLSTIKESVELKYIKNKCESWTGGLQRILCMQGGDDDGSYAKNSDAPASAITLSKPLLVAAIQSMKLFEGEESLRIADLGCATGYNTLATVDLVVENLRGRYNQECGFEPEFEAFFSDLPSNDFNSLFRSLPPFTNSKEQKYYAAGVPGSFYNRLFPKGKLHVAVCLSALHWLSQIPETVLDKRSPAWNKGRAWIDRAKEEVVEAYEKQSKEDLEAFLRCRKEEIVEGGMLFILMAGRSSSQRPENQLGDPDSRTKHPFTTSMDQAWEDLLNEGLIDQETRDTFNIPAYMRSTDEVEKAFHQSSGFEIQRLEYLRIPEHSKEKQEEWIRDPVSYGRAKANLVRATLKPMVEAHLGPKLSEELFKRFEKRVSGDMAMLHKTCFYGVIVVSAIRK 417
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00083 417 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 50 412 IPR029063 -
Eupl5g00083 417 Gene3D Vaccinia Virus protein VP39 67 341 IPR029063 -
Eupl5g00083 417 Pfam SAM dependent carboxyl methyltransferase 86 413 IPR005299 GO:0008168(InterPro)
Eupl5g00083 417 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 52 412 IPR005299 GO:0008168(InterPro)|GO:0008757(PANTHER)|GO:0032259(PANTHER)
Eupl5g00083 417 Gene3D - 52 398 IPR042086 -
Eupl5g00083 417 MobiDBLite consensus disorder prediction 1 23 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00083 K18886 gibberellin A4 carboxyl methyltransferase [EC:2.1.1.276]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2202425 Eupl Eupl4g01709 Eupl-Chr4:32548295 Eupl5g00083 Eupl-Chr5:1792869
2209489 Eupl Eupl12g00107 Eupl-Chr12:3686378 Eupl5g00083 Eupl-Chr5:1792869
2212593 Eupl Eupl6g00329 Eupl-Chr6:5074995 Eupl5g00083 Eupl-Chr5:1792869
2214726 Eupl Eupl1g00048 Eupl-Chr1:1599095 Eupl5g00083 Eupl-Chr5:1792869