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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00089 ATGGCTGAGCTTCTGAGCAAAAGCAATCTGTTTTCTCCTTCGTGTGCACACCATCTCTGTATCTCTTCTTCTCCCAAGAACTTATCACCTTCTTTCGTTACTGGGTTTCCTTCTCTGAAACTCCAACCTCTCAAATCTTCCTCCAACTCTGACTTTCATGGCCGTAGAATCGTTCTTCCACAAGTGGAGAGAGAACCAAGAAGAGGAAATCTCCAAGCTTTTTCTGCTCAGATGAGCCTTTGTATTGGGAAAGCTCAGAAATGGTGGGTTAAGGGGATTCAGCCCAACATGAAGGAGATAACTTCAGCACAAGATCTTGTTGGTTCCTTATTAAACGCAGGAGATAAACTAGTTATTTTGGATTTCTTCTCTCCTGGTTGTGGAGGCTGCAAAGCTCTTCATCCAAAGATCTGTCAATTTGCAGAGATGAATCCAGATGTTCAGTTCCTTCAGGTGAACTATGAGGAGCACAAATCCATGTCTTATAGCCTTAATGTCCATGTTCTACCCTTCTTCAGGTTTTACAGAGGAGCCCATGGTCGTCTCTGCAGCTTTAGCTGCACCAACGCCACTATCAAGAAATTCAAAGATGCACTGGCCAAGCACACCACAGAGCGGTGCAGCCTTGGGCCACCAAAAGGGCTGGAGGAATCAGAGCTTCTAGCCTTGGCTGCAAACAAAGATCTCTCCTTCAACTACACACCAAAGCTCCCAGCAAGGGAACTAGTGTCTCTCCCTGCTGTACAAGAAGAGATAAAACATCCAGCTTATGCAAACATAAAGCTCCCTCTTCCTTCATCCTCAAAAGCTAACAAAGACTCCGAGGAGAAAACCTTGGTCACAGCTGGGAGATGA 855 45.5 MAELLSKSNLFSPSCAHHLCISSSPKNLSPSFVTGFPSLKLQPLKSSSNSDFHGRRIVLPQVEREPRRGNLQAFSAQMSLCIGKAQKWWVKGIQPNMKEITSAQDLVGSLLNAGDKLVILDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMSYSLNVHVLPFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHTTERCSLGPPKGLEESELLALAANKDLSFNYTPKLPARELVSLPAVQEEIKHPAYANIKLPLPSSSKANKDSEEKTLVTAGR 284
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00089 284 Pfam Thioredoxin 111 179 IPR013766 -
Eupl5g00089 284 MobiDBLite consensus disorder prediction 270 284 - -
Eupl5g00089 284 ProSiteProfiles Thioredoxin domain profile. 65 253 IPR013766 -
Eupl5g00089 284 SUPERFAMILY Thioredoxin-like 86 202 IPR036249 -
Eupl5g00089 284 PANTHER THIOREDOXIN, MITOCHONDRIAL 33 249 - GO:0009507(PANTHER)|GO:0045454(PANTHER)
Eupl5g00089 284 CDD TRX-family 113 177 - -
Eupl5g00089 284 FunFam Thioredoxin-like 1-2, chloroplastic 86 204 - -
Eupl5g00089 284 Gene3D Glutaredoxin 89 201 - -
Eupl5g00089 284 MobiDBLite consensus disorder prediction 263 284 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00089 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2202108 Eupl Eupl4g01113 Eupl-Chr4:17008674 Eupl5g00089 Eupl-Chr5:1926317
2202792 Eupl Eupl5g00089 Eupl-Chr5:1926317 Eupl9g00396 Eupl-Chr9:10408232
2214728 Eupl Eupl1g00053 Eupl-Chr1:1708996 Eupl5g00089 Eupl-Chr5:1926317
2216650 Eupl Eupl11g00792 Eupl-Chr11:10164457 Eupl5g00089 Eupl-Chr5:1926317
2219209 Eupl Eupl4g01112 Eupl-Chr4:16996696 Eupl5g00089 Eupl-Chr5:1926317