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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00090 ATGGAGGGGAGTTCGAGTGGAAACGACGTGGAGCTGCTCTGCAAAACCCTACAAGTGGAGCACAAGCTATTCTACTTCGACCTGAAGGAGAATCCTCGAGGTCAGTATTTGAAAATCTCTGAGAAGACTTCGGCGACGAGATCGACCATCATCGTCCCTGTTAGCGGCATTGTTTGGTTCTTAGATCTCTTCAATTACTACGTTAATTCCGATGAACAGGACGTTTTTAGCAAGGAATTGCAGCTCGACACCAAGGTGTTTTACTTTGACGTTGGCGAGAATAAAAGGGGGCGCTTTTTGAAGGTTTCAGAAGCATCCGTTAGCAGAAACCGCAGTACGATCATTGTTCCTGCAGGAAGTGCCAGAGATGAAGGGTGGGCAGCATTCAGGAACATCTTAGCAGAGATCAATGAAGCTTCAAGGCTTTTTATCCTACCCACCCAGGAAAGCTCTGAACCTTCAGAACGGCTAGCGGGGCTTTCAGATGATGTGGGTGCTGGCTTCATATCCGGCCACAGTACTCAACCTTCCCCAGCATCTGATTTGAATGTAGACAGGTCGGTTGAATTGCCACCGCAAGATGAAATTGGTAACTTGGGGGTTTCCAAGGTGATCAGAGCTGATCAAAAGAGGTTTTTCTTTGATCTTGGGAGCAACAACAGAGGTCATTTCTTGAGGATATCTGAGGTGGCGGGGGCTGATCGTTCATCTATCATTCTCCCCCTGTCTGGGCTAAAGCAGTTTCATGAAATGGTTGGTCATTTTGTGGAGATCACTAAAGATCGAATTGAAGGGATGACAGGTGCAAATGTCCGGACGGTGGAGCCCCAACAGAGATGA 840 47.62 MEGSSSGNDVELLCKTLQVEHKLFYFDLKENPRGQYLKISEKTSATRSTIIVPVSGIVWFLDLFNYYVNSDEQDVFSKELQLDTKVFYFDVGENKRGRFLKVSEASVSRNRSTIIVPAGSARDEGWAAFRNILAEINEASRLFILPTQESSEPSERLAGLSDDVGAGFISGHSTQPSPASDLNVDRSVELPPQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGADRSSIILPLSGLKQFHEMVGHFVEITKDRIEGMTGANVRTVEPQQR 279
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00090 279 FunFam Transcription factor Pur-alpha 1 6 70 - -
Eupl5g00090 279 SMART pur 199 260 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 SMART pur 11 72 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 SMART pur 74 141 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 FunFam Transcription factor Pur-alpha 1 71 138 - -
Eupl5g00090 279 FunFam transcription factor Pur-alpha 1 192 263 - -
Eupl5g00090 279 PANTHER PUR-TRANSCRIPTIONAL ACTIVATOR 5 272 IPR006628 GO:0000977(PANTHER)|GO:0000977(InterPro)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0032422(InterPro)|GO:0032422(PANTHER)
Eupl5g00090 279 Pfam PurA ssDNA and RNA-binding protein 77 137 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 Pfam PurA ssDNA and RNA-binding protein 194 255 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 Pfam PurA ssDNA and RNA-binding protein 15 69 IPR006628 GO:0000977(InterPro)|GO:0032422(InterPro)
Eupl5g00090 279 Gene3D - 4 70 - -
Eupl5g00090 279 Gene3D - 71 141 - -
Eupl5g00090 279 Gene3D - 192 263 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00090 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2214729 Eupl Eupl1g00054 Eupl-Chr1:1725383 Eupl5g00090 Eupl-Chr5:1954292