AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00099 ATGCAGCAGCAACCTCAGGCGCCGACGGCCACTACCCCGCATCCGGAGCCGCTGGATTCTGGAGGATCTACGGCGGAGGCGCCACCGAAACAGGTGGCACTGGCGATGGATAGACTATCGCGCGCGGCTCGTCTCATTGCGGACATCCGGCTCGGTGCCGATCGCCTCCTCGAAGCGCTCTTCGTCTCCGCACAACCTCATCAATCCAACAAACCCCTACATCTGATCCTCAAAGAGGAGTCTTCAATGCGACAACACCTTCAAGATCTCCGAACCGTCGGAAGGCAACTGGAAGATTCTGGAGTTCTGAGTGGATCTCTTCGGTCACGAAGTAATTCTTGGGGTTTGCACATGCCCCTTGTTTGTCCTGATGGTGCTGTTGTTGCATATGCTTGGAAACGTCAACTTGCTGGCCAGGCTGGTGCATCTGCTGTTGACAGAACCAGGCTAGCTCTCAAGGCATTCACTGATCAGAAGAGGCGATTCTTCCCCCACCTTGAAGATGATACAGCCGGCCAGGCTTCTGGCGGGGAATCTGGAATTTCAAAGAAACATTGTGGTCCCCAGGCATCAGCCATGGGTCATAAAGAAGAGTTAAGTGAAGACAGAACATTATCTGATGTTCTCATGCGTTTGGATAAAGAGGCACCTAACATTAAAATTTTTACATATCAACGCTTGGACTGGTTGAAAAGAGCTTCTTCACTGTCGTTTTCATCAAATGAGAATTCCATAGAGTCATCCAAGGAATATAATTTCCACAATTCGAATAAACTACGAACAGGGTCACTGGGTGCCGTGGCTGCAGATCAGGTTGCTGTGGTTGAGTTGTTGGTGCCTTCTGTTTTCAGAGCTATAGTATCATTGCATCCGGCTGGCTCCATAGACCCTGATGCAGTGGCGTTCTTTTCTCCTGACGAGGGAGGCAGCTATATACATGCAAGAGGTTTTTCAGTCTATCATGTATTTAGACACATCACGGAACATGCTGTTAAAGCATTGCAATATTTTCTTGGTACCAAAACTGATATGGCATTATATCTTCTTTTGCACTGGATCTGCAGCTATCAAACTCTATTTATGAAAGTTTGCAGTAAGTGTGAACGGCTTCTGACGATGGACAAATCATCAGCTTTATTCTTGCCTCCTGTTCATCGACCTTACCGATATTCTCCTGTTACTAAAAGCTCATCAACCCAATCAACGTTGTCAACAAAGGAGCAGAGCTTGGATCTCATCACGGCTTATCACATTGGGTGTTCTTCAGATGAAGCCTAG 1278 47.73 MQQQPQAPTATTPHPEPLDSGGSTAEAPPKQVALAMDRLSRAARLIADIRLGADRLLEALFVSAQPHQSNKPLHLILKEESSMRQHLQDLRTVGRQLEDSGVLSGSLRSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDDTAGQASGGESGISKKHCGPQASAMGHKEELSEDRTLSDVLMRLDKEAPNIKIFTYQRLDWLKRASSLSFSSNENSIESSKEYNFHNSNKLRTGSLGAVAADQVAVVELLVPSVFRAIVSLHPAGSIDPDAVAFFSPDEGGSYIHARGFSVYHVFRHITEHAVKALQYFLGTKTDMALYLLLHWICSYQTLFMKVCSKCERLLTMDKSSALFLPPVHRPYRYSPVTKSSSTQSTLSTKEQSLDLITAYHIGCSSDEA 425
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00099 425 PANTHER 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED 14 421 IPR021627 GO:0003713(PANTHER)|GO:0006357(PANTHER)|GO:0016592(InterPro)|GO:0016592(PANTHER)
Eupl5g00099 425 MobiDBLite consensus disorder prediction 1 27 - -
Eupl5g00099 425 Pfam Mediator complex subunit 27 318 420 IPR021627 GO:0016592(InterPro)
Eupl5g00099 425 MobiDBLite consensus disorder prediction 166 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00099 K15170 mediator of RNA polymerase II transcription subunit 27
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2214733 Eupl Eupl1g00067 Eupl-Chr1:2256836 Eupl5g00099 Eupl-Chr5:2282266