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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00102 ATGAGTTTACCACACCTCCAATCCTCCACTCTGTGTCAGAAGAGTGATGGTGAAAATGGTTGCAGAGGATTTGCAGGGTTGAGCTTTCTTCCACCTCCTCCTCCTCCTCCAGCTTCTTATCCTCCTAGTTTTGGGGTTTTGGGTTCTCCTGGAGAGAAAGTGGAGATGGGTTTTCAGCCATTGGAGCAGCAGATGAAAGGTTGGAACTTTCAGCCATCTGAGGGTAGCAAGGGCATAAGTGGGGTTGAGAGGTTTTGGGGGAATGAGAAAAATGGGATGGGTATGATGAACCAAGGTGGTGAGGAGGAAGAAAAAGGTGATTGCTCTGTAGCAGGAAAGGAGCATGAGAATGGACTGTCTAATAAGCTCTGTGCAAGAGGCCATTGGAGGCCAGCTGAAGATGCTAAGCTCAAAGAGCTTGTCTCTCAATATGGCCCTCAGAACTGGAACCTCATTGCTGAGAAGCTTGAAGGAAGATCAGGGAAAAGCTGCAGGTTAAGATGGTTTAACCAGCTAGATCCAAGGATTAACAGGAGAGCTTTTAGTGAGGAAGAAGAGGAGAGACTGTTAGCTGCCCATAGACTCTATGGGAACAGATGGGCCATGATAGCTAGGCTTTTTCCTGGGAGGACTGATAATGCAGTTAAGAACCATTGGCATGTGATCATGGCTAGGAAACACAGAGAGCAATCCAGTGTTTATAGGAGGAGGAAGCCCTCCTCTTCTTCTCAGGTCTATAAGAGGATGGAGATGACCCACCAACACAATGCATGCAGTGAGTCAACCATTACAAGCATCAGAGATGAATCTGCCTCAACCTGCACTGATCTCTCCTTGAATTCCTCTTCAAGCAGAGTTCATCCTGTTTTATTCACCAGATTTAGTCCACACCAACACTACCAGCCCTATGAATTTCAAATGGGCTCATCAGAAGAAAAGATGGTGACTTTGAGAAGTGGGTATTTCCAAAAGTTTGATAGTTCTGGCAATGGCTCCCATCATCCTGGGCCAATGGTGATGACTATGGGTATGGATCAACCTGGTTATTCAGATTCAAATTCTGAAGGCTCAGCAACTGAGTCAGTGGCCAACAACAGGAAGAATCTCTGTATGGATGGGGAAATTGATAATGGGGGTGTGAAGACCAGTCTGCCCTTCATTGATTTCCTTGGAGTTGGAGCCAATTAG 1188 46.3 MSLPHLQSSTLCQKSDGENGCRGFAGLSFLPPPPPPPASYPPSFGVLGSPGEKVEMGFQPLEQQMKGWNFQPSEGSKGISGVERFWGNEKNGMGMMNQGGEEEEKGDCSVAGKEHENGLSNKLCARGHWRPAEDAKLKELVSQYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHRLYGNRWAMIARLFPGRTDNAVKNHWHVIMARKHREQSSVYRRRKPSSSSQVYKRMEMTHQHNACSESTITSIRDESASTCTDLSLNSSSSRVHPVLFTRFSPHQHYQPYEFQMGSSEEKMVTLRSGYFQKFDSSGNGSHHPGPMVMTMGMDQPGYSDSNSEGSATESVANNRKNLCMDGEIDNGGVKTSLPFIDFLGVGAN 395
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00102 395 Pfam Myb-like DNA-binding domain 129 189 - -
Eupl5g00102 395 Gene3D - 126 177 - -
Eupl5g00102 395 FunFam MYB transcription factor 126 177 - -
Eupl5g00102 395 CDD SANT 129 170 IPR001005 -
Eupl5g00102 395 CDD SANT 189 220 IPR001005 -
Eupl5g00102 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 172 IPR017930 -
Eupl5g00102 395 FunFam MYB transcription factor 179 250 - -
Eupl5g00102 395 ProSiteProfiles Myb-like domain profile. 126 172 IPR001005 -
Eupl5g00102 395 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Eupl5g00102 395 PANTHER MYB PROTEIN-RELATED 103 305 IPR050560 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Eupl5g00102 395 SUPERFAMILY Homeodomain-like 126 219 IPR009057 -
Eupl5g00102 395 Gene3D - 179 255 - -
Eupl5g00102 395 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 173 227 IPR017930 -
Eupl5g00102 395 SMART sant 125 174 IPR001005 -
Eupl5g00102 395 SMART sant 177 225 IPR001005 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00102 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2196503 Eupl Eupl13g01327 Eupl-Chr13:27331132 Eupl5g00102 Eupl-Chr5:2342620
2202570 Eupl Eupl4g01951 Eupl-Chr4:45985312 Eupl5g00102 Eupl-Chr5:2342620
2202798 Eupl Eupl5g00102 Eupl-Chr5:2342620 Eupl5g02161 Eupl-Chr5:48203859
2214734 Eupl Eupl1g00068 Eupl-Chr1:2325010 Eupl5g00102 Eupl-Chr5:2342620
2216647 Eupl Eupl11g00782 Eupl-Chr11:10036238 Eupl5g00102 Eupl-Chr5:2342620
2219206 Eupl Eupl4g01100 Eupl-Chr4:16802109 Eupl5g00102 Eupl-Chr5:2342620
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00419 . 1 138 MYB Transcription Factor family AT1G09540 77.536 1.03e-77 241.0
Eupl11g00289 . 1 157 MYB Transcription Factor family AT5G14340 42.038 1.84e-28 105.0
Eupl11g00120 . 84 128 MYB Transcription Factor family AT1G66380 57.778 1.18e-13 62.0
Eupl11g01138 . 3 207 MYB Transcription Factor family AT4G38620 56.585 3.07e-80 240.0
Eupl11g00967 . 26 227 MYB Transcription Factor family AT3G30210 45.32 1.95e-47 154.0
Eupl11g00803 . 150 326 MYB Transcription Factor family AT5G15310 32.932 6.90e-15 71.2
Eupl11g00802 . 44 88 MYB Transcription Factor family AT5G15310 91.111 5.90e-22 94.7
Eupl11g00782 . 105 219 MYB Transcription Factor family AT1G69560 91.304 1.39e-75 238.0
Eupl11g00754 . 1 328 MYB Transcription Factor family AT1G74650 54.438 6.47e-109 318.0
Eupl11g01306 . 16 285 MYB Transcription Factor family AT1G68320 47.619 4.58e-86 258.0
Eupl11g00505 . 92 203 MYB Transcription Factor family AT5G14750 41.935 1.71e-20 83.6
Eupl11g00489 . 19 226 MYB Transcription Factor family AT3G27810 60.096 1.80e-79 234.0
Eupl11g00478 . 161 416 MYB Transcription Factor family AT4G18770 51.321 3.66e-80 251.0
Eupl6g01673 . 1 134 MYB Transcription Factor family AT1G66370 61.94 1.33e-56 177.0
Eupl6g01644 . 12 143 MYB Transcription Factor family AT3G12720 84.962 2.34e-82 251.0
Eupl13g01141 . 1 257 MYB Transcription Factor family AT1G22640 57.588 1.63e-96 281.0
Eupl4g01452 . 45 126 MYB Transcription Factor family AT4G28110 85.366 8.96e-49 158.0
Eupl4g01339 . 26 228 MYB Transcription Factor family AT3G30210 36.098 3.78e-28 103.0
Eupl3g01138 . 3 305 MYB Transcription Factor family AT5G67300 53.894 5.00e-104 305.0
Eupl3g01095 . 215 349 MYB Transcription Factor family AT4G18770 64.085 3.31e-61 198.0
Eupl3g01308 . 4 150 MYB Transcription Factor family AT4G37260 63.576 1.40e-60 190.0
Eupl9g00280 . 1 120 MYB Transcription Factor family AT2G36890 84.167 1.33e-75 231.0
Eupl3g00603 . 5 112 MYB Transcription Factor family AT1G17950 86.111 1.38e-67 209.0
Eupl3g00689 . 1 365 MYB Transcription Factor family AT1G34670 52.151 1.86e-108 319.0
Eupl5g00827 . 19 248 MYB Transcription Factor family AT3G13540 54.118 1.68e-85 254.0
Eupl2g00165 . 1 349 MYB Transcription Factor family AT4G21440 52.0 8.37e-114 334.0
Eupl2g00329 . 81 121 MYB Transcription Factor family AT3G13540 58.537 3.48e-12 57.4
Eupl2g00175 . 1 272 MYB Transcription Factor family AT3G23250 44.681 7.32e-66 205.0
Eupl8g01151 . 1 332 MYB Transcription Factor family AT5G16770 47.872 1.40e-95 285.0
Eupl8g01273 . 4 117 MYB Transcription Factor family AT5G35550 71.053 8.00e-58 184.0
Eupl8g01274 . 1 207 MYB Transcription Factor family AT5G35550 47.867 1.87e-56 178.0
Eupl1g01703 . 1 250 MYB Transcription Factor family AT3G46130 52.59 2.66e-77 231.0
Eupl1g01448 . 1 129 MYB Transcription Factor family AT5G57620 82.946 9.76e-78 238.0
Eupl13g01816 . 1 129 MYB Transcription Factor family AT1G34670 73.846 1.08e-65 201.0
Eupl13g01738 . 1 365 MYB Transcription Factor family AT1G34670 54.865 3.70e-119 346.0
Eupl6g00588 . 71 112 MYB Transcription Factor family AT5G35550 57.143 2.18e-13 60.8
Eupl6g00566 . 7 111 MYB Transcription Factor family AT1G66370 78.095 1.45e-59 186.0
Eupl6g00495 . 81 122 MYB Transcription Factor family AT3G13540 59.524 6.48e-13 59.3
Eupl6g00477 . 3 490 MYB Transcription Factor family AT2G32460 38.264 8.26e-81 258.0
Eupl6g00618 . 7 151 MYB Transcription Factor family AT1G66370 63.448 1.99e-63 194.0
Eupl6g00617 . 84 128 MYB Transcription Factor family AT1G66380 62.5 1.03e-13 63.9
Eupl1g00068 . 98 223 MYB Transcription Factor family AT1G69560 84.127 5.56e-73 229.0
Eupl1g00150 . 4 550 MYB Transcription Factor family AT3G11440 42.832 5.79e-128 384.0
Eupl1g00087 . 1 274 MYB Transcription Factor family AT1G08810 53.943 2.12e-105 307.0
Eupl5g00127 . 1 270 MYB Transcription Factor family AT1G08810 57.143 3.00e-103 300.0
Eupl5g00102 . 105 219 MYB Transcription Factor family AT1G69560 88.696 3.76e-72 227.0
Eupl13g01327 . 3 160 MYB Transcription Factor family AT1G17950 62.346 8.93e-69 211.0
Eupl4g01100 . 105 219 MYB Transcription Factor family AT1G69560 92.174 9.28e-76 238.0
Eupl4g01128 . 44 387 MYB Transcription Factor family AT3G01140 54.78 1.74e-122 357.0
Eupl4g01011 . 16 436 MYB Transcription Factor family AT1G14350 51.874 1.18e-170 487.0
Eupl4g01070 . 1 321 MYB Transcription Factor family AT3G47600 53.89 3.67e-112 327.0
Eupl4g00885 . 1 160 MYB Transcription Factor family AT3G28470 70.0 1.44e-76 230.0
Eupl4g00884 . 224 314 MYB Transcription Factor family AT3G28470 34.021 1.43e-06 45.4
Eupl4g00707 . 35 203 MYB Transcription Factor family AT5G14750 50.785 4.36e-57 178.0
Eupl4g00679 . 14 214 MYB Transcription Factor family AT5G40350 59.701 1.44e-80 236.0
Eupl4g00658 . 161 416 MYB Transcription Factor family AT4G18770 54.023 5.53e-84 262.0
Eupl4g00419 . 87 155 MYB Transcription Factor family AT5G14340 57.971 1.35e-18 83.2
Eupl4g00368 . 1 129 MYB Transcription Factor family AT3G61250 66.412 7.18e-57 191.0
Eupl4g00919 . 124 166 MYB Transcription Factor family AT5G11510 76.744 8.37e-16 74.7
Eupl6g00096 . 1 171 MYB Transcription Factor family AT5G56110 91.813 1.97e-117 340.0
Eupl4g01751 . 3 215 MYB Transcription Factor family AT4G38620 54.46 6.06e-79 236.0
Eupl4g01739 . 28 691 MYB Transcription Factor family AT3G18100 47.578 0.0 597.0
Eupl9g00562 . 18 140 MYB Transcription Factor family AT5G14750 64.228 2.16e-54 170.0
Eupl9g00561 . 1 154 MYB Transcription Factor family AT5G35550 61.404 2.52e-65 204.0
Eupl9g00560 . 1 149 MYB Transcription Factor family AT1G22640 59.211 3.27e-59 187.0
Eupl9g00559 . 1 147 MYB Transcription Factor family AT2G16720 61.224 2.44e-64 202.0
Eupl1g00640 . 10 214 MYB Transcription Factor family AT3G13540 58.079 2.33e-88 263.0
Eupl1g01118 . 17 272 MYB Transcription Factor family AT5G11050 43.007 5.00e-62 202.0
Eupl8g00358 . 69 125 MYB Transcription Factor family AT5G52600 45.614 2.60e-13 60.5
Eupl8g00471 . 1 348 MYB Transcription Factor family AT1G63910 50.708 6.00e-101 299.0
Eupl3g00902 . 1 126 MYB Transcription Factor family AT3G49690 91.27 4.08e-83 252.0
Eupl14g00819 . 1 285 MYB Transcription Factor family AT4G12350 57.84 8.31e-102 296.0
Eupl10g00837 . 12 961 MYB Transcription Factor family AT5G11510 38.619 0.0 617.0
Eupl10g00992 . 1 118 MYB Transcription Factor family AT5G65790 83.898 5.04e-75 233.0
Eupl13g00048 . 1 282 MYB Transcription Factor family AT4G38620 59.649 7.36e-107 308.0
Eupl13g00516 . 5 113 MYB Transcription Factor family AT4G37260 76.147 1.96e-57 182.0
Eupl13g00670 . 5 320 MYB Transcription Factor family AT4G37260 47.536 3.48e-100 296.0
Eupl2g01467 . 12 141 MYB Transcription Factor family AT3G12720 85.385 5.57e-83 249.0
Eupl2g01442 . 8 111 MYB Transcription Factor family AT1G66370 75.0 2.33e-57 180.0
Eupl10g01203 . 11 154 MYB Transcription Factor family AT5G35550 65.541 1.26e-63 199.0
Eupl10g01202 . 1 128 MYB Transcription Factor family AT4G09460 68.75 1.58e-63 199.0
Eupl10g01201 . 1 200 MYB Transcription Factor family AT2G16720 50.5 4.02e-63 198.0
Eupl10g01200 . 14 159 MYB Transcription Factor family AT5G35550 66.234 2.47e-64 201.0
Eupl9g00084 . 19 695 MYB Transcription Factor family AT4G32730 44.722 4.70e-175 530.0
Eupl9g01441 . 4 115 MYB Transcription Factor family AT5G52600 72.807 1.44e-55 174.0
Eupl9g00466 . 1 127 MYB Transcription Factor family AT3G13890 85.827 8.42e-76 234.0
Eupl14g00119 . 15 140 MYB Transcription Factor family AT3G13540 74.603 9.55e-69 211.0
Eupl14g00225 . 69 126 MYB Transcription Factor family AT5G52600 50.0 2.14e-14 63.2
Eupl14g00344 . 1 348 MYB Transcription Factor family AT1G63910 49.432 3.44e-100 297.0
Eupl14g00484 . 1 67 MYB Transcription Factor family AT3G61250 67.164 7.22e-27 101.0
Eupl14g00507 . 19 196 MYB Transcription Factor family AT4G32730 75.843 2.20e-93 304.0
Eupl5g01349 . 1 250 MYB Transcription Factor family AT3G46130 54.373 3.93e-81 242.0
Eupl5g01258 . 20 519 MYB Transcription Factor family AT5G02320 49.442 1.07e-151 444.0
Eupl5g01254 . 1 363 MYB Transcription Factor family AT2G37630 70.685 9.27e-174 487.0
Eupl7g00712 . 1 815 MYB Transcription Factor family AT1G09770 76.528 0.0 1231.0
Eupl4g01622 . 16 286 MYB Transcription Factor family AT1G68320 49.664 7.23e-90 268.0
Eupl7g00726 . 1 249 MYB Transcription Factor family AT2G31180 49.242 2.14e-80 240.0
Eupl7g00751 . 5 128 MYB Transcription Factor family AT1G66380 43.307 8.45e-28 97.4
Eupl5g00495 . 3 343 MYB Transcription Factor family AT3G08500 46.467 2.39e-84 256.0
Eupl5g01984 . 51 112 MYB Transcription Factor family AT3G55730 67.742 1.28e-25 97.4
Eupl5g02062 . 12 427 MYB Transcription Factor family AT5G58850 40.041 6.86e-82 257.0
Eupl5g02161 . 2 149 MYB Transcription Factor family AT3G50060 58.333 1.90e-55 178.0
Eupl14g01324 . 1 296 MYB Transcription Factor family AT3G60460 43.925 5.50e-69 219.0
Eupl5g00257 . 9 550 MYB Transcription Factor family AT3G11440 39.859 7.22e-110 337.0
Eupl5g00258 . 9 550 MYB Transcription Factor family AT3G11440 39.859 7.22e-110 337.0
Eupl4g01911 . 1 152 MYB Transcription Factor family AT1G66370 64.706 1.29e-63 197.0
Eupl4g01912 . 3 152 MYB Transcription Factor family AT1G66370 63.399 1.27e-63 197.0
Eupl4g01951 . 2 244 MYB Transcription Factor family AT1G17950 57.895 7.05e-92 269.0
Eupl7g01754 . 1 364 MYB Transcription Factor family AT1G09540 46.22 1.04e-108 324.0
Eupl3g00250 . 1 239 MYB Transcription Factor family AT4G38620 56.42 9.77e-94 275.0
Eupl10g00495 . 4 171 MYB Transcription Factor family AT5G52600 55.682 1.00e-60 187.0
Eupl2g00946 . 72 193 MYB Transcription Factor family AT5G02320 26.429 2.87e-08 55.1
Eupl3g02212 . 1 269 MYB Transcription Factor family AT2G16720 57.609 1.35e-104 302.0
Eupl9g01069 . 1 187 MYB Transcription Factor family AT5G57620 79.365 1.90e-100 299.0
Eupl14g01033 . 18 137 MYB Transcription Factor family AT5G14750 63.333 1.50e-54 170.0
Eupl14g01057 . 1 296 MYB Transcription Factor family AT3G60460 44.688 1.95e-70 218.0
Eupl5g00232 . 9 550 MYB Transcription Factor family AT3G11440 42.039 3.86e-119 361.0
Eupl1g01905 . 54 389 MYB Transcription Factor family AT3G55730 49.02 1.53e-104 313.0
Eupl1g01779 . 18 519 MYB Transcription Factor family AT5G02320 50.276 1.39e-159 465.0
Eupl1g01781 . 1 367 MYB Transcription Factor family AT2G37630 67.209 7.39e-162 456.0
Eupl14g00539 . 19 196 MYB Transcription Factor family AT4G32730 75.843 2.20e-93 304.0
Eupl14g00518 . 1 288 MYB Transcription Factor family AT3G61250 60.317 4.99e-124 355.0
Eupl7g01503 . 1 323 MYB Transcription Factor family AT5G49330 38.579 6.57e-67 215.0
Eupl7g01616 . 18 296 MYB Transcription Factor family AT5G49620 54.515 7.52e-90 268.0
Eupl5g01668 . 1 127 MYB Transcription Factor family AT5G57620 85.039 3.97e-78 239.0
Eupl5g01690 . 5 199 MYB Transcription Factor family AT3G53200 53.333 6.50e-64 197.0
Eupl13g01029 . 1 303 MYB Transcription Factor family AT3G49690 49.699 4.38e-90 270.0
Eupl13g01216 . 9 550 MYB Transcription Factor family AT3G11440 39.859 6.42e-110 337.0
Eupl6g00726 . 1 349 MYB Transcription Factor family AT4G21440 54.047 1.53e-116 340.0
Eupl12g00520 . 1 832 MYB Transcription Factor family AT1G09770 74.611 0.0 1234.0
Eupl12g00537 . 1 119 MYB Transcription Factor family AT2G31180 83.193 4.47e-74 221.0
Eupl11g01415 . 1 363 MYB Transcription Factor family AT2G37630 46.096 6.68e-105 311.0
Eupl12g00402 . 14 242 MYB Transcription Factor family AT3G24310 58.898 1.29e-79 241.0
Eupl11g01556 . 1 216 MYB Transcription Factor family AT5G16600 65.179 3.25e-97 287.0
Eupl5g00230 . 36 550 MYB Transcription Factor family AT3G11440 40.185 6.84e-107 329.0
Eupl12g01287 . 18 247 MYB Transcription Factor family AT5G49620 59.592 2.13e-83 252.0
Eupl12g01383 . 1 364 MYB Transcription Factor family AT1G09540 43.71 5.57e-109 325.0
Eupl12g00921 . 1 161 MYB Transcription Factor family AT2G47460 72.05 1.98e-78 243.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl Myb_DNA-bind_6 2e-17 CL0123 TF MYB