AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00115 ATGGTTAGCCAAGGAATAATAATGAGGCCCAAAACCAAGATCGTTTGCACGTTGGGTCCAGCATCGAGATCTGTACCTATGATCGAGAAGCTTTTGATAGCGGGGATGAACGTCGCACGCTTTAACTTCTCGCACGGATCCCACGACTACCACCAAGAAACCCTTGAGAATCTCAAGATGGCCATGGAGAACACTGGGATCCTCTGTGCAGTCATGTTAGATACCAAGGGACCAGAGATTCGAACTGGGTTTTTGAAGGATGGCAAACCCATTCAGCTCAAGAAAGGTGAAGAGATCACAATCTCCACAGACTATAGCATAAAGGGTGATGAAAGCATGATCTGCATGAGCTACAAAAAGTTAGCCGAGGATGTTAAGCCACAAAGTGTGATATTATGTGCGGATGGCACAATCACACTTACTGTGCTGTCTTGTGACAAGGAGTCGGGTTTGGTTCGCTGCCGCTGTGAGAACTCAGCCGTTCTTGGTGAGAGGAAGAATGTCAATCTTCCAGGGGTTATCGTAGACCTCCCAACCCTAACGGAGAAAGACAAGGAAGACATCTTACAGTGGGGAGTTCCCAATAAGATTGACATGATTGCTCTATCCTTCGTTCGAAAAGGTTCAGACCTTGTTGAGGTGCGCAAGCTTCTGGGAAAGCACACAAAGACAATCCTTCTCATGTCAAAGGTTGAAAATCAAGAAGGGGTGGCTAATTTTGATGAGATCCTTGCGAACTCAGATGCGTTTATGGTGGCACGAGGTGACCTGGGAATGGAAATCCCAATCGAGAAGATATTTCTAGCACAAAAGGTAATGATCTACAAGTGCAACATCCAAGGAAAACCTGTGGTCACTGCAACCCAAATGTTGGAGTCCATGATCAAGTCTCCACGGCCTACCCGGGCTGAAGCCACTGATGTCGCTAATGCAGTTCTTGATGGTACGGATTGTGTGATGCTCAGTGGGGAAACGGCAGCTGGAGCTTACCCTGAACTCGCTGTTCAGACCATGGCCAAGATTTGCATCGAAGCAGAGTCCACCCTCGATTATGGAGCAGTCTTTAAAGGGATTATGGGAGCTGCACCAGTGCCCATGAGCCCATTAGAGAGCCTGGCTTCCTCAGCAGTAAGAACAGCCAACTCTGCGAAAGCTACTCTCATTTTGGTCCTGACCAGAGGTGGAAGCACTGCCAAGCTGGTGGCCAAGTACAGGCCGTCTATGCCAATTTTGTCTGTGGTCGTCCCTGAGTTAAAGACAGATTCCTTTAATTGGTTATGCAGTGATGAAGCTCCGGCAAGGCATAGCCTTATTTTCCGCGGTTTGGTACCTGTCTTGAGCGCAGGGTCCGGAAAGGCATCTGACACAGAATCAACAGAAGCAGCACTAAATTATGCCCTCCAACATGCCAAAGCGAAGGAATTCTGCAAGCCAGGAGATTCAGTTGTAGCGCTGCACCGAGATGGGTCTGCTTCTGTGATCAAAATCTTGACTGTGAAGTGA 1503 48.17 MVSQGIIMRPKTKIVCTLGPASRSVPMIEKLLIAGMNVARFNFSHGSHDYHQETLENLKMAMENTGILCAVMLDTKGPEIRTGFLKDGKPIQLKKGEEITISTDYSIKGDESMICMSYKKLAEDVKPQSVILCADGTITLTVLSCDKESGLVRCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDILQWGVPNKIDMIALSFVRKGSDLVEVRKLLGKHTKTILLMSKVENQEGVANFDEILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVQTMAKICIEAESTLDYGAVFKGIMGAAPVPMSPLESLASSAVRTANSAKATLILVLTRGGSTAKLVAKYRPSMPILSVVVPELKTDSFNWLCSDEAPARHSLIFRGLVPVLSAGSGKASDTESTEAALNYALQHAKAKEFCKPGDSVVALHRDGSASVIKILTVK 500
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 67 83 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 254 278 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 323 339 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 304 322 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 197 211 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 279 303 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PRINTS Pyruvate kinase family signature 227 253 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 ProSitePatterns Pyruvate kinase active site signature. 225 237 IPR018209 GO:0004743(InterPro)|GO:0006096(InterPro)
Eupl5g00115 500 FunFam Pyruvate kinase 346 487 - -
Eupl5g00115 500 FunFam Pyruvate kinase 155 345 - -
Eupl5g00115 500 FunFam Pyruvate kinase 78 178 - -
Eupl5g00115 500 NCBIfam pyruvate kinase 11 487 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 SUPERFAMILY PK beta-barrel domain-like 78 177 IPR011037 -
Eupl5g00115 500 Gene3D - 346 486 IPR036918 -
Eupl5g00115 500 CDD Pyruvate-Kinase 10 499 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 Gene3D - 11 345 IPR040442 -
Eupl5g00115 500 SUPERFAMILY PK C-terminal domain-like 334 499 IPR036918 -
Eupl5g00115 500 Pfam Pyruvate kinase, barrel domain 11 335 IPR015793 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0006096(InterPro)|GO:0030955(InterPro)
Eupl5g00115 500 PANTHER PYRUVATE KINASE 9 495 IPR001697 GO:0000287(InterPro)|GO:0004743(InterPro)|GO:0004743(PANTHER)|GO:0005737(PANTHER)|GO:0006096(InterPro)|GO:0006096(PANTHER)|GO:0030955(InterPro)
Eupl5g00115 500 Gene3D - 78 178 IPR015806 GO:0004743(InterPro)|GO:0006096(InterPro)
Eupl5g00115 500 Pfam Pyruvate kinase, alpha-beta domain 370 489 IPR015795 -
Eupl5g00115 500 SUPERFAMILY Phosphoenolpyruvate-pyruvate domain 6 351 IPR015813 GO:0003824(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00115 K00873 pyruvate kinase [EC:2.7.1.40]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2194679 Eupl Eupl11g01721 Eupl-Chr11:35932855 Eupl5g00115 Eupl-Chr5:2822337
2202729 Eupl Eupl4g02234 Eupl-Chr4:52917165 Eupl5g00115 Eupl-Chr5:2822337
2202803 Eupl Eupl5g00115 Eupl-Chr5:2822337 Eupl5g01795 Eupl-Chr5:42864365
2214740 Eupl Eupl1g00076 Eupl-Chr1:2599603 Eupl5g00115 Eupl-Chr5:2822337