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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00143 ATGGGGCTGACATTCACGAAGCTCTTCAGTCGGTTATTTGCGAAGAAGGAGATGAGGATCCTGATGGTTGGCCTTGACGCTGCTGGTAAAACCACCATCCTTTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATCCCAACTATTGGTTTCAATGTAGAGACTGTGGAGTACAAGAATATCAGCTTCACCGTTTGGGATGTCGGGGGCCAGGATAAGATCAGACCACTATGGAGGCACTATTTCCAAAATACACAAGGTCTCATCTTTGTTGTTGACAGCAATGACAGGGACCGTGTAGTTGAGGCCAGGGATGAGCTCCACAGGATGCTGAATGAGGATGAGTTACGAGATGCTGTGTTGCTTGTTTTCGCTAATAAGCAAGATCTGCCGAATGCAATGAATGCTGCCGAAATTACTGATAAGCTTGGTTTGCAATCCTTGCGGCAGAGACATTGGCATGAACTGTTATTCAACTGTGCTGGAGCAGAATTTGGGGATTATATATCAGGCATTTATTTTTCAGCTGAGATTAATGCTCATTGGATTCTAGACTATGTACCTTTTTTCATTGCTATCGTGGTGGGAAAGGTTTTGTTATCTTCCACATTCGTTGGTCTATTTTTAGCTTTCAGTTTTTGTTTTTTAATTTCTCTGGAGATGGTGAATAGTTAG 675 43.56 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLQSLRQRHWHELLFNCAGAEFGDYISGIYFSAEINAHWILDYVPFFIAIVVGKVLLSSTFVGLFLAFSFCFLISLEMVNS 224
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00143 224 Pfam ADP-ribosylation factor family 5 160 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 NCBIfam small GTP-binding protein domain 16 141 IPR005225 GO:0005525(InterPro)
Eupl5g00143 224 SMART arf-sub-2 1 182 - -
Eupl5g00143 224 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 SMART sar-sub-1 1 187 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Eupl5g00143 224 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 155 IPR024156 GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0006886(PANTHER)|GO:0016192(PANTHER)
Eupl5g00143 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 155 IPR027417 -
Eupl5g00143 224 Gene3D - 3 171 IPR027417 -
Eupl5g00143 224 FunFam ADP-ribosylation factor 1 2 181 - -
Eupl5g00143 224 ProSiteProfiles small GTPase Arf family profile. 11 187 - -
Eupl5g00143 224 SMART rab-sub-5 18 159 - -
Eupl5g00143 224 CDD Arf1-5-like 18 154 IPR045872 GO:0003924(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00143 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr4:10222956 Eupl5g00143 Eupl-Chr5:3730462 dispersed
Eupl Eupl-Chr5:3730462 Eupl7g01625 Eupl-Chr7:38093423 dispersed
Eupl Eupl-Chr5:9474804 Eupl5g00143 Eupl-Chr5:3730462 transposed
Eupl Eupl-Chr1:3168838 Eupl5g00143 Eupl-Chr5:3730462 wgd