AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00161 ATGGAGTCTGCCTCCATTGCGGTGGCCGCTGATGTAACTGAAGATTCTATGGACTTATCTTCTTTTGGAGGAACTGAGATTTTGAATAACGGCGATTCGGAGAAGACCGGAGAGATCGGAGCGATGGTGGTGGTGGCAGCAAATGAGGGAGAGAATTTAGGTGGTTTCGATGGTGATGGCGATGATCAGAAAGAGCAAAGTGGACTGAAGTCACCGTGGAAGAGACCGGCTGCTGATAGGAAGGGAGCCGAGTCTCCGGTGATGGGAGCAGAATCTTGGCCAGCGCTTGCTGAAGCACGGCCAAAGAATTCAGATGCTGCCGCGGCAAAGCTGTCTGCGACGGCATCTGGTCTGACTGCTGATGCCGTTCCTCCTCCGATGCAGGAACCAAGTGGGCTGCAGAAATCTGATGGGTCTGGAAGCACAAATCATTCCCATAAGCATCCAACATTACATCATCAAAAAGCAGGTTCCAAGCGTAATCATCCTCCAAATGGTGTACCACCCTTTCCTGTACATGTACCTTATCATCAACCGCCGATGCCACCTGTTCTCCATACTGTTGTACCTGCACCGCATATTCCATTTCATGAGTATGCTTACCAGCCTTGTCCTGGACCCTTTCCCAATGTAGATCCTCATATGGTAAAATCTGGATGTGAAACCCCTATGCAAGCTTTTGTTGCACCTGGTCATGGTGGTGGCATTGATGCCAATAGAAGCTTTCAGCCTCCACCCCGAGGAGATCAAAATATGTATGCTGGCAATTTTGCAAATAGACGACATAATGTACAAGAACCTGGTGGCCGTTTTAATCATACATGGCGTCACCAACGGGCATTTAATCCCAGAGACAATATTAATATGCAACAAGGTTTTGGACCAAGGGCATTTGTGAGGCCGCCTCCAATTTTTGGTCCGGGTCCAGGGTTTATAAACGGACCAGGTTTTCCTGGTTCTGCTTCTATGTACTATCTTAGTGCCCCGCATCCAGACTCCATAAGGGGTGGTCCTCGTTTTATTCATCCTCCACATCCTGGGTTTTCCATACCAGCACCAGAGGCACAAGCCTTGAGGGCTAACATAGTAAAACAGATAGAGTATTATTTCAGCGATGAAAATTTGCAGAAGGACCACTACTTGCTTTCCTTAATGGATGACCAAGGATGGGTACTTATATCCAAAATTGCGGACTTTAACAGGGTTAAGAAAATGACTACAAATATACCTTTTATTCTGGATGCACTGTGCAACTCAAGTACTGTAGAGGTGCAGGGTGACAAGATACGGAAACGTGATGACTGGTCAAAGTGGCTTCCAGCATCTGGACGTCCTACATTTTTGTCTCAACCTCAGACTCCACAGGGGAAAGTTGACGAGAAGGCTACTGTTACTGTGAATAATAGTGAGTTCAATGAGGGTAACGCAAGGGGCATTTCCAAAGGGCCCACAGAATTTACATCGGATAACAAAATCCTGGTGGAGCACTTACCCTCAAATAAAGATATTCCAAAGGTAGCATGCAGGAGTAGTTCAGAATGCAACAATGAGATGTTACTGCCTGATGGTGAAACAGAAGCATGCGATGGAGAAACTTGGGATTCAAGCAGGACATTTAATTCTGAACCAAGTTTAGAAATCAAATTATCACAGCTTGGAACCAATTATATCTGTATATCAGACAAGGATTCAGCTGGTGGCTCTGAAACGAAGAATACTGGTGGCAATTGCTGTGTCGGCTCTGAATGTTTACAAGGAGCTGCCAAACCTGCAAATTGTGTCGATCATGAATTTGAAAGCATGGAGATGCCAAAGGATTTGATGGTGCAGAAGCTTGGCGGCCTGTCAAATGATTTTGTTAGTGGATTTATGGGAGAACAGAGCACTTTCATGCTTGATGAGGAGCTCGAATTGGAGCAAACGACAAGCAGGAAAGATCATCTTTCATCTAGTAGAAGTGCTTGCTTTCTTTTGCTGACTGTTGCTTGTGCGTCTTCCAAAAATGGCACTGTTCCCCAAAGGATTGATGATGAAGATGATGAGATGGATGTCAATGATCCGGATGTTCAGAGACTTATAATTGTCACTCAGAATATCAGGATAGACGAAGACGATAGAACTGGTGCTAGAGAATCAAGATCCATTTCGAATGAGCTTGCTTCTGCAATCAATGATGGGCTTTACTTTTATGAACAGGAATTAAGAGCTAAGCGATCTAATAATCGGAGGAATAACTCTGGTTTAGAGACAAAAGATGGAGATTCTAGAACTTCCAGCCTTGCACCTGGATTACCAAATTCAAAGATTAGTGTGAGTCCTGTTGGAAACAATGCCTCAGAAGAACCTGGACATGCCAGTTCTCGGAGGAGGCAAAATAAAGGCGTTAACAAGCAACAATCATCCCATAAGCAGCGTTTATTCCCAAGCAATTTTAGGAACCATGGCAATGGCCGTAACCGTTATGGCATCATATCAGAAAGTCCACCAAGCAATTCAGTTGGCTTTTTCTTTGGATCAACGCCACCGGAAAGTCATGGCCCTGTGTCTTCAAAGTTGGGTGCTTCACCTCATGGGATCCCTTCTGGTAGTAGTCCACCAGTGGGCTCTATGCCAAAGCCATTCCCACCATTTCAGCATCCAAGTCACCAGCTTCTGGAAGAAAATGGTTTCAGGCAGCAAAAGTACCTGAAGTTTTACAAACGTTGCCTAAGTGACCGAAAGAGAATGGGAATTGGTTGCAGCGAGGAAATGAATACACTGTACCGTTTCTGGTCATTTTTCCTCAGAAACGTGTTCATTACTTCTATGTACAATGACTTCCGGAAGTTAGCTCTGGAAGATGCAGCTGCTAAGTATAATTATGGAATAGAATGCCTTTTCAGGTTTTACAGTTATGGGTTGGAGAAGCAATTCAGAGAAAACCTGTATGAGGATTTTGAACAGTTCACCCTTGAATTCTACAATAAAGGCAGTCTTTATGGCCTTGAAAAATATTGGGCCTTCCACCATTATCGGGAGGTTCGTGACAGAAAAGCATCTCTAAAGAAGCATCCAGAATTGGATAGATTGCTGAGAGAAGAATATCGTGGCTTAGATGACTTCCGTGCGAAGGAGAAGGCGGCAAAAGAGGGAAGCAGCAGTAATCACAGTGGTCCTTCTGACAGAGACAATAGAGAGACTCCATTTTTAGGGCAGGCCAAAAGCAAGTCCAACTTGTCAAGGGAGCTGGAGTTAGCGGCCCATTGA 3246 44.89 MESASIAVAADVTEDSMDLSSFGGTEILNNGDSEKTGEIGAMVVVAANEGENLGGFDGDGDDQKEQSGLKSPWKRPAADRKGAESPVMGAESWPALAEARPKNSDAAAAKLSATASGLTADAVPPPMQEPSGLQKSDGSGSTNHSHKHPTLHHQKAGSKRNHPPNGVPPFPVHVPYHQPPMPPVLHTVVPAPHIPFHEYAYQPCPGPFPNVDPHMVKSGCETPMQAFVAPGHGGGIDANRSFQPPPRGDQNMYAGNFANRRHNVQEPGGRFNHTWRHQRAFNPRDNINMQQGFGPRAFVRPPPIFGPGPGFINGPGFPGSASMYYLSAPHPDSIRGGPRFIHPPHPGFSIPAPEAQALRANIVKQIEYYFSDENLQKDHYLLSLMDDQGWVLISKIADFNRVKKMTTNIPFILDALCNSSTVEVQGDKIRKRDDWSKWLPASGRPTFLSQPQTPQGKVDEKATVTVNNSEFNEGNARGISKGPTEFTSDNKILVEHLPSNKDIPKVACRSSSECNNEMLLPDGETEACDGETWDSSRTFNSEPSLEIKLSQLGTNYICISDKDSAGGSETKNTGGNCCVGSECLQGAAKPANCVDHEFESMEMPKDLMVQKLGGLSNDFVSGFMGEQSTFMLDEELELEQTTSRKDHLSSSRSACFLLLTVACASSKNGTVPQRIDDEDDEMDVNDPDVQRLIIVTQNIRIDEDDRTGARESRSISNELASAINDGLYFYEQELRAKRSNNRRNNSGLETKDGDSRTSSLAPGLPNSKISVSPVGNNASEEPGHASSRRRQNKGVNKQQSSHKQRLFPSNFRNHGNGRNRYGIISESPPSNSVGFFFGSTPPESHGPVSSKLGASPHGIPSGSSPPVGSMPKPFPPFQHPSHQLLEENGFRQQKYLKFYKRCLSDRKRMGIGCSEEMNTLYRFWSFFLRNVFITSMYNDFRKLALEDAAAKYNYGIECLFRFYSYGLEKQFRENLYEDFEQFTLEFYNKGSLYGLEKYWAFHHYREVRDRKASLKKHPELDRLLREEYRGLDDFRAKEKAAKEGSSSNHSGPSDRDNRETPFLGQAKSKSNLSRELELAAH 1081
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 1037 1081 - -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 738 818 - -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 792 816 - -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 18 32 - -
Eupl5g00161 1081 CDD LAM 359 431 - -
Eupl5g00161 1081 SMART dm15 889 930 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Eupl5g00161 1081 SMART dm15 970 1005 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Eupl5g00161 1081 SMART dm15 931 969 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Eupl5g00161 1081 PANTHER LUPUS LA PROTEIN-RELATED 116 974 IPR045180 GO:0003723(PANTHER)
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 119 173 - -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 751 782 - -
Eupl5g00161 1081 SUPERFAMILY Winged helix DNA-binding domain 350 440 IPR036390 -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 51 90 - -
Eupl5g00161 1081 Pfam LARP1 HEAT repeat region 879 1025 IPR006607 GO:0000339(InterPro)|GO:0048255(InterPro)
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 1 35 - -
Eupl5g00161 1081 ProSiteProfiles La-type HTH domain profile. 352 441 IPR006630 -
Eupl5g00161 1081 SMART la 356 434 IPR006630 -
Eupl5g00161 1081 Gene3D - 351 439 IPR036388 -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 841 865 - -
Eupl5g00161 1081 Pfam La domain 362 416 IPR006630 -
Eupl5g00161 1081 MobiDBLite consensus disorder prediction 57 81 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00161 K18757 la-related protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr3:53301818 Eupl5g00161 Eupl-Chr5:4094726 dispersed
Eupl Eupl-Chr5:4094726 Eupl6g00787 Eupl-Chr6:12695250 dispersed
Eupl Eupl-Chr1:3386991 Eupl5g00161 Eupl-Chr5:4094726 wgd