AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00200 ATGGAACGAGGTTCGGTTCCAGACTCTGGTCCTTCATCGGGTTCTTACGATAAGTCTAGAGTTCTTGATGTGAAGCCTTTGCGTTGTTTGGTTCCAATGTTTGCATCTCCACCACTTGGGCTTCAATCTCCTCCTCCCTTTGTCTGTGCATCGCCGTTGGGCCCGTTCCCTCCTGGGTATTCTCCATTTTACCCCTTTTCCATCCCTTCAGAACCTCAAATACCACCTGAACAACAGCACCCACAGACCCCCAGTGGAGCCACCACTCAAGCAGGAGTTTTCGGATACAACTACCATCCGATGCAGATGCCATCAACTCCAGTGTCTTCGTTTCGAACACCACCTCCACCTCCACCTCCAAAACAGATGTTTGAGGGGTCTGCGAATGGTGATGCAGGACCATCGAAGAAGAGCTCCAAAAACCGGGAAGCAGGTATACATCTGGGTGATTCTGTGAGAACAGCATCAGAAGAAGATGGATGGAGTAATAACCAGAGACAGGAACAATTGCACCCCAAAAGTGCAAAGAAGAGTGATTCTACCAGATCAGCATCAGAAGATGGGTGGACTAACAGCCGGAAGCGGGCAGTTCATCAGCTCAGTGGCTGTAATATGCCTAGTACTGATGCAGAAGCTACTAGTAATGGTGAGAGACAGAAATCTAAGTCACAAAAGAGAACGATGAACAGCCAAGAAATCAGGTTATCACCACCAGCAGACGGTGATAGTGAGTCGGTTGGGGATATTCTTGTGAAATTTGATGCGCTCAGGCGAAGACTTGCTCAAATTGAAGACTCAAAGGAAGCAAGCCCCGGGATCAAACGGTCTGACTTAAAATCTGGGACAATTATGATAAATAAAGGGCTTCGGACAAACACAAGGAAGAGAATCGGAGCTGTTCCTGGGGTTGAGATTGGAGATGTTTTCTTTTTCAGGATTGAGATGTGTTTGGTGGGATTGCACTCTCCAGTTATGGCTGGGATCGATTACATGAGTTTCAAGTTTGACCAAGAAGAAGAACCTGTGGCTGTGAGCATCGTTTCATCTGGAGGGTACGAGGATGATGTGGAGGACGGGGATATGTTGATTTACAGTGGCCAGGGTGGGAATGTGAACAAGAAAGATGGGAAGGATGTATTCGATCAAAAGCTGGAAAGAGGTAATCTCGCCCTGGAGAGAAGTTTGCGTCGGGCAAATGAGGTAAGAGTAATTCGGGGTGTGAAGGATGTGGGGAATCCATCTGCGAAGGTCTACATCTATGATGGTCTCTATAAAATCCATGAGTCATGGATGGAGAAAGGGAAGTCGGGTTGCAACGTTTTCAAGTATAAGTTGCTTCGAGTACCTGGGCAGCCTGAGGCATTTGTAATGTGGAAATCAATCCAGCAATGGAAGGAAGGTGTCACTTCTAGGCCTGGCATTATATTGCCGGACCTAACCTCAGGGGCAGAAAAATTGCCAGTTTCTCTTGTAAATGATATTGATGATGAGAGGGGGCCTGCTCATTTCACATATTCCCCTAGTCTCAAGTATTCAAAACCAGTTAACTCAATGAAAGCTTCTGTTGGCTGCAATTGCCGTAGTGCATGCCTCCCAGGTGACCCTGATTGCTCTTGTGTTCGGAAAAACGGAGGTGATCTCCCATATATTGCCAATGGAATCCTTGTGATGTGGAAACCCTTGATACATGAGTGTGGTCCTTCATGCCTCTGCCATCCTAATTGCCGGAACCAAGTGTCCCAAAATGGTCTGAAAGTCCGCTTGGAGGTGTTTAAGACAAAGGATAGAGGTTGGGGACTACGGTCTTGGGATCCCATTCGGGCAGGTATGTTTATTTGTGAATATGCAGGTGAAGTCATAGATAAAATTAAGGTAGAGGAGGATGGGGATGAAGATGAAGAAGACGAGTATATCTTCGATGCAACCCGCACCTGTTACAACTCATTTGAATGGAATTACATACCCGAGTTACTAGGAGAAGAGAGGCATGGTGGCTTGAATGAGGCATACAAACCCCCATTACGCCTGACCATAAGTGCAAAAAACAATGGAAACGTAGCTCGTTTTATGAACCATAGTTGCTCCCCAAATGTCTTTTGGCAGCCAGTCTTACATGAACATAATGACGAATCCTATCCTCATATTATGTTTTATGCAATCAAACACATTCCTCCCATGACAGAGTTGACATACGATTATGGGCTCAGTGGGGCGCACAGTAGTAATGTGCATGACAAGAGGAGAAAGTGTTTATGTGTATCGTCGAAATGCAGAGGTTATTTTGGCTAG 2289 46.13 MERGSVPDSGPSSGSYDKSRVLDVKPLRCLVPMFASPPLGLQSPPPFVCASPLGPFPPGYSPFYPFSIPSEPQIPPEQQHPQTPSGATTQAGVFGYNYHPMQMPSTPVSSFRTPPPPPPPKQMFEGSANGDAGPSKKSSKNREAGIHLGDSVRTASEEDGWSNNQRQEQLHPKSAKKSDSTRSASEDGWTNSRKRAVHQLSGCNMPSTDAEATSNGERQKSKSQKRTMNSQEIRLSPPADGDSESVGDILVKFDALRRRLAQIEDSKEASPGIKRSDLKSGTIMINKGLRTNTRKRIGAVPGVEIGDVFFFRIEMCLVGLHSPVMAGIDYMSFKFDQEEEPVAVSIVSSGGYEDDVEDGDMLIYSGQGGNVNKKDGKDVFDQKLERGNLALERSLRRANEVRVIRGVKDVGNPSAKVYIYDGLYKIHESWMEKGKSGCNVFKYKLLRVPGQPEAFVMWKSIQQWKEGVTSRPGIILPDLTSGAEKLPVSLVNDIDDERGPAHFTYSPSLKYSKPVNSMKASVGCNCRSACLPGDPDCSCVRKNGGDLPYIANGILVMWKPLIHECGPSCLCHPNCRNQVSQNGLKVRLEVFKTKDRGWGLRSWDPIRAGMFICEYAGEVIDKIKVEEDGDEDEEDEYIFDATRTCYNSFEWNYIPELLGEERHGGLNEAYKPPLRLTISAKNNGNVARFMNHSCSPNVFWQPVLHEHNDESYPHIMFYAIKHIPPMTELTYDYGLSGAHSSNVHDKRRKCLCVSSKCRGYFG 762
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00200 762 Pfam SET domain 597 734 IPR001214 GO:0005515(InterPro)
Eupl5g00200 762 MobiDBLite consensus disorder prediction 170 193 - -
Eupl5g00200 762 ProSiteProfiles SET domain profile. 586 734 IPR001214 GO:0005515(InterPro)
Eupl5g00200 762 ProSiteProfiles Post-SET domain profile. 746 762 IPR003616 -
Eupl5g00200 762 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 281 466 - -
Eupl5g00200 762 Gene3D - 281 468 IPR036987 -
Eupl5g00200 762 MobiDBLite consensus disorder prediction 109 123 - -
Eupl5g00200 762 SMART G9a-1 293 451 IPR003105 -
Eupl5g00200 762 SUPERFAMILY PUA domain-like 281 469 IPR015947 -
Eupl5g00200 762 SMART preset-2 476 570 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl5g00200 762 SMART set-7 586 740 IPR001214 GO:0005515(InterPro)
Eupl5g00200 762 MobiDBLite consensus disorder prediction 194 214 - -
Eupl5g00200 762 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 109 760 IPR051357 GO:0003690(PANTHER)|GO:0016571(PANTHER)|GO:0042054(PANTHER)
Eupl5g00200 762 MobiDBLite consensus disorder prediction 64 246 - -
Eupl5g00200 762 Pfam Pre-SET motif 481 577 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl5g00200 762 MobiDBLite consensus disorder prediction 64 79 - -
Eupl5g00200 762 ProSiteProfiles Pre-SET domain profile. 522 583 IPR007728 GO:0005634(InterPro)|GO:0008270(InterPro)|GO:0042054(InterPro)
Eupl5g00200 762 Pfam SAD-SRA domain 296 451 IPR003105 -
Eupl5g00200 762 SUPERFAMILY SET domain 463 735 IPR046341 -
Eupl5g00200 762 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 142 762 IPR025794 GO:0042054(InterPro)
Eupl5g00200 762 Gene3D SET domain 469 761 IPR046341 -
Eupl5g00200 762 ProSiteProfiles YDG domain profile. 298 447 IPR003105 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00200 K24405 [histone H3]-lysine9 N-dimethyltransferase [EC:2.1.1.368]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr3:45662230 Eupl5g00200 Eupl-Chr5:5361135 dispersed
Eupl Eupl-Chr5:5361135 Eupl8g00895 Eupl-Chr8:25329214 dispersed
Eupl Eupl-Chr12:16052387 Eupl5g00200 Eupl-Chr5:5361135 transposed
Eupl Eupl-Chr1:4467302 Eupl5g00200 Eupl-Chr5:5361135 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl1g00135 . 1 669 Su(var)3-9 homologs gene family AT1G73100 50.213 0.0 654.0
Eupl8g00895 . 155 669 Su(var)3-9 homologs gene family AT5G04940 39.587 4.68e-114 367.0
Eupl12g00452 . 559 665 Su(var)3-9 homologs gene family AT1G73100 35.455 8.84e-12 59.7
Eupl12g00407 . 155 641 Su(var)3-9 homologs gene family AT5G04940 42.2 7.73e-113 352.0
Eupl5g00200 . 11 669 Su(var)3-9 homologs gene family AT1G73100 48.874 0.0 668.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Eupl SAD_SRA 6.4e-56 CL0178 TR SET