AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl5g00253 | ATGGGAGGAAGAACTGTTGTCTCTGACGAGGAAGATGAGGTCGAAGAGGAAGAAGACGAGAGAGAAGTTCGCGATGGAGATGCCGTCGATGTCGCAGAGAGGGACGACGACGAAGACGAAGACGAAGAAGACGAGGAGGGTCAGGATGAATACGAGAAGGATGGCTTTATAGTAGACGATGCAGATGAAGAAGAAGAGCAGGACGAGGAAGAACAAGAGAGGGCAAGCAGTGACGATGAGAGGCAAAAGAAGAAGAAAAGAAAGAAAAGAGAATCAGAGAAGAATTATGTTCTTGATGAGGATGACTACGAGTTGCTTCAGGATAACAACATTACGGGCTTCCACCGCCCCAAACCCGGGAGCAAAAAATTCAAGCGGCTGAAGAAAGCTGGGAGGGACACCGAACACGCAGAAGGGTCTGGTTTTTCTGATGAGGAGGAACTTGATAAAAGTGGTGGTCGGAGTGGACGGACTGCTGAGGAAAAGCTCAAGCGTAGTTTATTTGGTGATGATGAAGGTCCACCTCTCGAGGATATTGCTGAAGAGGAGGAACAACCAGAGGAAGAAGAGGATGCGGATATTGGCGAAGAGGATGAGATGGCAGATTTTATTGTGGACGAAGAGGAAGTTGACGAGAATGGGGCTCCTGTGAGACGGAGGAAGCCGAACAGAAAAAAGTCGAGGCAAGCACCGGGAGTTTCATCATCAGCACTGCAGGAAGCTCATGACATATTTGGTGATGTTGATGAACTCTTGATGCTTCGCAAGCAAGGCCTAGCAAAGAGTAGTAGGTATGATGATTCGGGCGAGTGGAAGGAAAGAAGGCTTGAAGATGAATTTGAACCCTTCATTCTTACGGAGAAGTATATGACTGAGAAGGATGATCGGATACGAGAAATTGACGTGCCTGAGAGGATCCAGATGTCAGAGGAAAGCACTGGGCCTGCTCCGACCGATGAAATGAGTATAGAAGATGAGAGTACATGGATTTATAACCAGCTTGCTACCAGTATGGTAGCATTGTTTGGCCAGAATAGAGTTAGTGAAGGGACTGACGAGGAAGGTAATGATCTGTCAAAAAAAATTAACAAGGAAGACATTGTAAGGTTCTTGGAATTGATGCATGTGCAGAAGCTTGATATTCCTTTTATTGCTATGTATAGGAAGGAGTTATGCCCTACCCTATTGAAAGACCCAGAGCATGACAAGATGGGTAGTGAAGATAGGGATACACCTACACTAAAGTGGCACAAGATACTTTGGGCGATCAAGGATTTGGACAGAAAGTGGCTGCTTCTTCAAAAGCGGAAGAATGCTCTTCAGTTGTACTACAATAAGCGATTCGAAGAAGAATCTCGAAGGATTTATGATGAAACGAGGCTCACCCTGAACCAGCAGCTTTTTGACTCCATTACTGAATCCCTCAAGACTGCTGAATCAGAAAGAGAGGTTGATGATGTTGACTCGAAGTTTAATTTGCATTTCCCTCCTGGTGAAGTTGGTGTGGAAGAAGGACAATTTAAAAGGCCAAAGAGGAAATCACACTATAGCATCTGTAGTAAGGCTGGCCTATGGGAGGTCGCAAGCAAGATTGGGTACAACTCTGAGCAATTTGGATTGCTTATTACTTTAGAAAGGATGAGAATGGATGAATTGGAGGATGCCAAAGACACTCCCGAGGAAATAGCTTCAAATTTTACATGTGCGATGTTTGAGAATCCTCAGGCTGTGCTCAAAGGTGCCAGGCACATGGCAGCAGTGGAGATCAGCTGTGAGCCACGTGTGAGGAAACATGTTCGTAGTATCTTTATGGACAATGCTGTAGTCACAACTAGTCCTACCCCCGATGGAAACCTGGCTATAGATTCTTTCCATCAGTTTGCAGGAATAAAGTGGCTACGTGACAAGCCACTAACTAAATTCGAAGATGCACAGTGGCTTCTTATCCAAAAGGCTGAAGAGGAGAAGCTCCTTCAAGTTACTATAAAATTGCCAGAACGTATCCTAAATAAGTTGATAAGTGACTCTAATGATTATTATCTCAGTGATGGTGTTAGTAAATCTGCTCAACTTTGGAACGAGCAGCGCAAGTTGATATTGCAGGATGCATTCTTCAATTTTCTTCTTCCTTCGATGGAAAAGGAAGCTCGATCTGTCTTGACTGCTAGAGCGAAGAACTGGCTACTTATGGAATATGGGAAGCACTTGTGGGACAAGGTGTCTGTTGCACCGTATCAACGGAAAGAAAATGATGTTGCCTCAGATGATGAAGCAGCCCCAAAAGTCATGGCTTGTTGTTGGGGCCCTGGAAAGCCAGCAACCACTTTTGTGATGTTGGATTCATCTGGGGAAGTGCTGGATGTGTTATACACTGGTTCTCTCAGCATTCGGGGTCAGAGTGTTAATGACCAGCAACGCAAAAAAAATGACCAGCAACGTGTCCTGAAGTTCATGACAGATCACCAACCACATGTTGTCGTTCTAGGAGCTGTGAATTTGTCTTGTACACGGTTGAAGGATGATATTTATGAGATCATTTTTAAGATGGTGGAGGAATATCCTAGAGATATTGGTCAAGAGATGGACGAGTTAAATGTTGTTTATGGGGATGAATCCATGCCTCGTCTTTACGAAAATTCACGGATTTCTTCAGACCAACTACCTGGGCAGCCAGGCATTGTTAAGCGGGCTGTGGCTCTTGGTCGTTACCTTCAAAATCCTTTGGCCATGGTTGCAACGCACTGTGGGCCAGAGAGGGAGATCCTATCTTGGAAGCTCGGCCCTTTAGAGCATTTTCTCACTCCTGACGAGAAGTATGGGATGGTTGAACAAGTTATGGTAGATGTCACCAACCAAGTAGGTGTTGACATAAATTTGGCTGCAAGCCATGAATGGCTGTTTGCTCCTTTACAATTTGTTTCGGGGGTTGGACCCAGAAAAGCAGCTTCTTTACAGAGAGCATTAGTCAGAGCTGGAGCAATTTTCACTCGGAAGGATCTTGCAATGAGTCTTAAAAAGAAGGTTTTTATCAATGCAGTTGGTTTCTTACGTGTCCGTCGGAGTGGACTGGCGACCAACAGCGTCCATATTATAGATTTGTTGGATGATACAAGAATTCATCCGGAGTCGTATGAACTTGCGAAGAATATGGCAAAGGATGTCTTTGATGAAGATGCTCCACAGGATTCAAATGATGCGGATGATGACGCACAGGAGATGGCAATAGAGCATGTTAGGGAGAAGCCGAACTTTTTAAAAGCACTTGATATCAACGAATATTCTATAAGTGCTGAGAAACGGTTCAATGTCTCTAACAAAAGAGAGACTCTTTATGATATAAAGATGGAATTGCTACATGGATTTCGAGACTGGCGTGGTCCTTACAGGGAACCGGATCAGAACGAGGAATTCTATATGATTTCTGGTGAAACTGAGGATACCATTGCTGAAGGAAGAATTGTGCAGGCAACAGTTCGCAGGGTGCAACCTCAACGAGCGTTCTGTGTGCTTGAATCTGGTTTGACTGGTTGGGTTATGAGTGAAGATTATTCAGATGTGAAGAGACAGATTGATTTGACTGAGGAGTTGAGTGAAGGCGATATTCTTACCTGCAAGATTAGAACAATTCAAAAGAACAGATACCAGGTGTATCTAACTTGTAAAGAAAGTGAATTGAAGAGAGATCGGTATCAGAATTCTCGAAACCGTGATCCCTACTACAAGCCAGATGAGGGCAGTTTACAGAGTGAGCAAGAGAAAGCTCGCAAGGAGAAGGAGCTTGCTAAGAAGCATTTCAAGCCAAGGATGATTGTCCATCCTCGTTTCCAAAATATAACAGCAGATGAAGCGATTGAGTTTCTTTCAGATAAGGAAGCAGGTGAAAGTATTATTCGTCCTAGCTCTAGAGGACCATCTTATTTGACTCTAACTCTGAAAGTTTATGATGGAGTGTATGCTCACAAAGACATAGTTGAAGGTGGAAAGGATCACAAGGACATCACTAGCTTGCTTCGTCTTGGGAAAACATTGAAAATAGGGGATGACACTTTCGAGGATTTAGATGAGGTTATGGATCGATACGTGGACCCACTGGTAGCCCACCTTAAGGCTATGCTTAACTACCGGAAATTCAAGAGGGGCTCAAAAGCTGAAGTTGATGATCTTCTCAGGGTGGAGAAATCAGAGTATCCAATGAGGATAGTTTACTGTTTTGGCATTTCTCATGAACATCCTGGAACTTTCATTTTGTCTTATATACGGAGTACAAATCCACACCATGAGTACATTGGTTTGTATCCCAAGGGCTTAAAGTTCCGGAAACGGACATTTGAAGACATTGACCGGCTTGTGTCATATTTCCAGAAACACATTGATGATCTGCAGCATGATTCAGCTCCGTCGATCCGATCAGTTGCCGCCATGGTGCCTATGAAAAGCCCTGCAACTGGAGGTTCCTCTGGAGGGGCATCTGTAGGAAGTGGTTGGGGTGGCTCAGGCAACAGTGATGGCGGTTGGAGAGGTCAGTCGAACTGGGACAGGGAGAGATCTTCTACACCGGGTTCAAGAACAGGTAGAAATGATTACAGAAATGGTGGTGGTCGAGATGGGCACCCGAGCGGGCTGCCTAGGCCATACGGTGGTGGGCGTGGTCGAGGCCGTGGCTCATATAATGGTAGAGGAAACAACAGCAGCAATGAAAGACAAGATTCTGGTTACAGCAACTCCAAATGGGGCTCAGGTCCCAAAGATGGCGATGATGGATGGAGCAATTTTCCTGGTGCTAAAGTTCAGAATTCACCGGGCAGAGAAGCTTTCCCTGGTGGTTGGGGCAGTGGTGGAGGTGGTAGTGGCAGCGGTGGCGGTGGTGGTGCTGGTGGTGGTTGGGGAGCTTCTGGTAGTGGTGGCAACGATGGTGGTGGTGGTTGGGGAGCTTCTGGTAGTGGTGGCAACGGTGGTGGTGGTGGTTGGGGGGCTGCTGGTAGTGGTGGCAGCGGTGGTGGTGGTGGTGGTGGTTGGGATTCATTTGGATCAAAAGGTACTGGTGCAGTGGATTCTGGTACTGATATTGGCAATTCTGGGTGGGCTGGTTCTAAGAAAAGTGGTTCATCTCGGCCAGAAGGTGGAAACGGTTGGTCAGGAAGTGGTGGCGGTGGCGGTGGCGGCAGTGGTGGTGGATGGAGTGGTGGTGGTGGTGGTGGTGGTGGTGGGTGGGGAAATTAG | 5220 | 46.0 | MGGRTVVSDEEDEVEEEEDEREVRDGDAVDVAERDDDEDEDEEDEEGQDEYEKDGFIVDDADEEEEQDEEEQERASSDDERQKKKKRKKRESEKNYVLDEDDYELLQDNNITGFHRPKPGSKKFKRLKKAGRDTEHAEGSGFSDEEELDKSGGRSGRTAEEKLKRSLFGDDEGPPLEDIAEEEEQPEEEEDADIGEEDEMADFIVDEEEVDENGAPVRRRKPNRKKSRQAPGVSSSALQEAHDIFGDVDELLMLRKQGLAKSSRYDDSGEWKERRLEDEFEPFILTEKYMTEKDDRIREIDVPERIQMSEESTGPAPTDEMSIEDESTWIYNQLATSMVALFGQNRVSEGTDEEGNDLSKKINKEDIVRFLELMHVQKLDIPFIAMYRKELCPTLLKDPEHDKMGSEDRDTPTLKWHKILWAIKDLDRKWLLLQKRKNALQLYYNKRFEEESRRIYDETRLTLNQQLFDSITESLKTAESEREVDDVDSKFNLHFPPGEVGVEEGQFKRPKRKSHYSICSKAGLWEVASKIGYNSEQFGLLITLERMRMDELEDAKDTPEEIASNFTCAMFENPQAVLKGARHMAAVEISCEPRVRKHVRSIFMDNAVVTTSPTPDGNLAIDSFHQFAGIKWLRDKPLTKFEDAQWLLIQKAEEEKLLQVTIKLPERILNKLISDSNDYYLSDGVSKSAQLWNEQRKLILQDAFFNFLLPSMEKEARSVLTARAKNWLLMEYGKHLWDKVSVAPYQRKENDVASDDEAAPKVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLSIRGQSVNDQQRKKNDQQRVLKFMTDHQPHVVVLGAVNLSCTRLKDDIYEIIFKMVEEYPRDIGQEMDELNVVYGDESMPRLYENSRISSDQLPGQPGIVKRAVALGRYLQNPLAMVATHCGPEREILSWKLGPLEHFLTPDEKYGMVEQVMVDVTNQVGVDINLAASHEWLFAPLQFVSGVGPRKAASLQRALVRAGAIFTRKDLAMSLKKKVFINAVGFLRVRRSGLATNSVHIIDLLDDTRIHPESYELAKNMAKDVFDEDAPQDSNDADDDAQEMAIEHVREKPNFLKALDINEYSISAEKRFNVSNKRETLYDIKMELLHGFRDWRGPYREPDQNEEFYMISGETEDTIAEGRIVQATVRRVQPQRAFCVLESGLTGWVMSEDYSDVKRQIDLTEELSEGDILTCKIRTIQKNRYQVYLTCKESELKRDRYQNSRNRDPYYKPDEGSLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADEAIEFLSDKEAGESIIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKDHKDITSLLRLGKTLKIGDDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFKRGSKAEVDDLLRVEKSEYPMRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGLKFRKRTFEDIDRLVSYFQKHIDDLQHDSAPSIRSVAAMVPMKSPATGGSSGGASVGSGWGGSGNSDGGWRGQSNWDRERSSTPGSRTGRNDYRNGGGRDGHPSGLPRPYGGGRGRGRGSYNGRGNNSSNERQDSGYSNSKWGSGPKDGDDGWSNFPGAKVQNSPGREAFPGGWGSGGGGSGSGGGGGAGGGWGASGSGGNDGGGGWGASGSGGNGGGGGWGAAGSGGSGGGGGGGWDSFGSKGTGAVDSGTDIGNSGWAGSKKSGSSRPEGGNGWSGSGGGGGGGSGGGWSGGGGGGGGGWGN | 1739 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl5g00253 | 1739 | Coils | Coil | 58 | 78 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1 | 238 | - | - | |
| Eupl5g00253 | 1739 | Pfam | Tex central region-like | 555 | 724 | - | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 750 | 1143 | IPR037027 | GO:0006139(InterPro) | |
| Eupl5g00253 | 1739 | Pfam | HHH domain | 1033 | 1056 | IPR041692 | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 1022 | 1124 | IPR042066 | - | |
| Eupl5g00253 | 1739 | Pfam | Spt6, S1-OB domain | 1137 | 1223 | IPR049540 | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 76 | 101 | - | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor Spt6 | 1025 | 1124 | - | - | |
| Eupl5g00253 | 1739 | SMART | S1-6 | 1149 | 1221 | IPR003029 | GO:0003676(InterPro) | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 31 | 75 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1479 | 1739 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 174 | 210 | - | - | |
| Eupl5g00253 | 1739 | Gene3D | SH2 domain | 1370 | 1466 | IPR036860 | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | Tex N-terminal region-like | 361 | 740 | - | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | Ribonuclease H-like | 760 | 915 | IPR012337 | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 499 | 953 | IPR023323 | - | |
| Eupl5g00253 | 1739 | Pfam | Helix-hairpin-helix motif | 919 | 1018 | IPR032706 | - | |
| Eupl5g00253 | 1739 | SMART | rnase-8s | 760 | 878 | IPR006641 | GO:0006139(InterPro) | |
| Eupl5g00253 | 1739 | SUPERFAMILY | SH2 domain | 1275 | 1361 | IPR036860 | - | |
| Eupl5g00253 | 1739 | Pfam | Holliday-junction resolvase-like of SPT6 | 759 | 912 | IPR028231 | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1483 | 1525 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1556 | 1577 | - | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 280 | 1021 | - | - | |
| Eupl5g00253 | 1739 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT6 | 11 | 1524 | IPR017072 | GO:0006368(PANTHER)|GO:0008023(PANTHER)|GO:0031491(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140673(InterPro) | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1680 | 1709 | - | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | SH2 domain | 1407 | 1460 | IPR036860 | - | |
| Eupl5g00253 | 1739 | CDD | SH2-Cterm-SPT6-like | 1371 | 1457 | IPR035018 | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 313 | 498 | IPR023319 | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor spt6 | 1370 | 1461 | - | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 128 | 172 | - | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor spt6 | 750 | 923 | - | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | RuvA domain 2-like | 1032 | 1126 | IPR010994 | - | |
| Eupl5g00253 | 1739 | PIRSF | Spt6 | 4 | 1530 | IPR017072 | GO:0140673(InterPro) | |
| Eupl5g00253 | 1739 | ProSiteProfiles | S1 domain profile. | 1151 | 1221 | IPR003029 | GO:0003676(InterPro) | |
| Eupl5g00253 | 1739 | Pfam | Acidic N-terminal SPT6 | 37 | 133 | IPR028083 | - | |
| Eupl5g00253 | 1739 | MobiDBLite | consensus disorder prediction | 1229 | 1256 | - | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor spt6 | 506 | 771 | - | - | |
| Eupl5g00253 | 1739 | Gene3D | SH2 domain | 1258 | 1369 | IPR036860 | - | |
| Eupl5g00253 | 1739 | Pfam | SH2 domain | 1250 | 1456 | IPR035420 | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor spt6 | 313 | 503 | - | - | |
| Eupl5g00253 | 1739 | Gene3D | - | 1144 | 1232 | IPR012340 | - | |
| Eupl5g00253 | 1739 | CDD | SH2-Nterm-SPT6-like | 1272 | 1360 | IPR035019 | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | Nucleic acid-binding proteins | 1146 | 1225 | IPR012340 | - | |
| Eupl5g00253 | 1739 | FunFam | Transcription elongation factor spt6 | 1258 | 1369 | - | - | |
| Eupl5g00253 | 1739 | SUPERFAMILY | RuvA domain 2-like | 930 | 1019 | IPR010994 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl5g00253 | K11292 | transcription elongation factor SPT6 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Eupl | Eupl-Chr1:5211018 | Eupl5g00253 | Eupl-Chr5:6962162 | wgd |