AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00287 ATGAAATTCATTTATTACAAGAACTCCGCTTTGTTATCAGCTATTGTTGTGGTTCTGTTCTGTTCTGTATTTTGTGAATTAGGGTTTTGCAGCGACGCCGAATTGATTAGGATGTCTACCGTCCTCGGAGGAGTTCGCGATTCTGAGGCTGCTGAGAACAGTGTGGAGATCGAAAGTCTCGCGAAGTTTGCTGTCGAAGAACACAACAAGAAAGAGAACGCGCTTCTGGAGTTTGCGAGGGTGGTGAAGGCAAAGGAGCAGGTGGTGGCTGGTACTCTTCACCATCTTACTATTGAGGCGATCGATGCTGGTAAGAAGAAGATCTATGAAGCGAAGGTCTGGGTGAAGCCATGGATGCACTTCAAGGAGTTGCAGGAATTCAAGCATGCTGGTGACGCTGCCCCCTCGTTTACCCCTTCTGATCTTGGGGTTAAGCAAGATGGCCACGGACCAGGATGGCGAGCAGTGCCAGCACATGATCCTGGAGTCCAAGATGCAGCGAATCATGCTGTGAAGACTATCCAGCAGAGGTCCAACTCGTTGGCCCCTTACGAACTTCTAGAGATCCTTCTTGCTCAGGCCGAGGTGATTGAAGACTTGGCCAAGTTTGATTTGCTTCTCAAGGTGAAGAGGGGAAGCAAGGAAGAGAAATACAAGGTTGAAGTCCATAAGAACGTTGAAGGTACCTTCAATTTGAATCAGATGGAGCAAGATCACTCTTGA 723 48.13 MKFIYYKNSALLSAIVVVLFCSVFCELGFCSDAELIRMSTVLGGVRDSEAAENSVEIESLAKFAVEEHNKKENALLEFARVVKAKEQVVAGTLHHLTIEAIDAGKKKIYEAKVWVKPWMHFKELQEFKHAGDAAPSFTPSDLGVKQDGHGPGWRAVPAHDPGVQDAANHAVKTIQQRSNSLAPYELLEILLAQAEVIEDLAKFDLLLKVKRGSKEEKYKVEVHKNVEGTFNLNQMEQDHS 240
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00287 240 ProSitePatterns Cysteine proteases inhibitors signature. 86 99 IPR018073 -
Eupl5g00287 240 Gene3D - 38 137 - -
Eupl5g00287 240 Pfam Aspartic acid proteinase inhibitor 56 129 IPR000010 GO:0004869(InterPro)
Eupl5g00287 240 Gene3D - 146 237 - -
Eupl5g00287 240 FunFam Cysteine proteinase inhibitor 39 138 - -
Eupl5g00287 240 CDD CY 43 129 IPR000010 GO:0004869(InterPro)
Eupl5g00287 240 PANTHER CYSTATIN FAMILY MEMBER 17 143 IPR027214 GO:0004869(InterPro)|GO:0004869(PANTHER)
Eupl5g00287 240 SMART CY-4 40 130 IPR000010 GO:0004869(InterPro)
Eupl5g00287 240 SUPERFAMILY Cystatin-monellin 45 132 IPR046350 -
Eupl5g00287 240 FunFam Cysteine proteinase inhibitor 150 239 - -
Eupl5g00287 240 SUPERFAMILY Cystatin-monellin 147 233 IPR046350 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00287 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:5586690 Eupl5g00287 Eupl-Chr5:8615162 wgd