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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl5g00320 ATGCTTCCTTGTTCTAAGTTTCTGGGTTTGTTTATCTTCTCTTTGTTCTTCGCAATCTCTTCTTCGACTTCAGTCTCGACTGATGGTCCCACAGTCTACGAAATCCTCCCCGAGTTCGGACTCCCGAGTGGACTCTTACCCGACTCGGTGAAAAGCTACTCTCTCAGCGACGATGGCAAGTTCGTCGTCGAATTGGATAAGCCCTGCTACGTTAAATTCGACTACTTGGTCTACTACGATCGTAAAATCTCCGGTATCCTCAAGTACGGTTCGATCACAAGCCTCAAGGGAATTGAGGTGCAGCGATTCCTAATCTGGCTTGATGTTGATGAGATCAGGGTTGATTTGCCGCCTTCCGATTCCATCTACTTTCAGGTTGGGTGGATCAACAAGAAGCTTGATGTTGATCAGTTCCAGACCGTCCATTCTTGCCGGGATAATGGGATTTCCTGTCAAGGGTCTTTTTCAGATCTTTTGAAGGTATCTTCGCTTCCTCTTCTGAAATTTATGAATTTTATTCTAATGGTTTCTAAATTTAGGGTAAGAAAAGAGAACCCAGAAACCCCTTTTGTGGAAATACTCGAATTTGTTGAGATGGTAGGCATCTGA 609 44.33 MLPCSKFLGLFIFSLFFAISSSTSVSTDGPTVYEILPEFGLPSGLLPDSVKSYSLSDDGKFVVELDKPCYVKFDYLVYYDRKISGILKYGSITSLKGIEVQRFLIWLDVDEIRVDLPPSDSIYFQVGWINKKLDVDQFQTVHSCRDNGISCQGSFSDLLKVSSLPLLKFMNFILMVSKFRVRKENPETPFVEILEFVEMVGI 202
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl5g00320 202 Gene3D - 20 148 IPR036758 -
Eupl5g00320 202 SUPERFAMILY At5g01610-like 11 146 IPR036758 -
Eupl5g00320 202 Pfam Protein of unknown function, DUF538 32 139 IPR007493 -
Eupl5g00320 202 PANTHER T31J12.3 PROTEIN-RELATED 22 144 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl5g00320 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr1:6192825 Eupl5g00320 Eupl-Chr5:9387509 dispersed
Eupl Eupl-Chr5:9387509 Eupl7g00273 Eupl-Chr7:6132590 dispersed
Eupl Eupl-Chr5:9374025 Eupl5g00320 Eupl-Chr5:9387509 proximal