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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl8g00794 ATGCATATTGAGGAATTGAAGGTGGGGGAGTTGGAAAGTGGAGAAGAAGAGTTGGTCACAGATGTTTGCGGTAATGAAAATTTTGCGTCAGATGCAAAAATGGTTTTGATTGGCGTAGGGGCTCGTGTTCTTTTCTATCCAACTCTTGTGTATAATGTTTTCCGGAACAAGATTCAGTCAGAGTTCCGATGGTGGGATTGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTTCCTACTGATGTTCCTCGCTTAAAACAACTTGGTGTTCGTGGAGTGATCACTCTAAATGAGCCATACGAGACATTGGTTTCCACATCACTATATTACGCTCACGGCATTGACCATTTGGTGATCCCTACCAGAGATTACCTTTTTGCTCCGTCATATGGAGATATATGCCAAGCTGTAGACTTCATCCATAAGAATGCATCAAGTGGGAAAACAACATACGTTCACTGTAAAGCTGGTCGGGGACGCAGCACAACCATTGTTCTCTGCTACCTGGTTCAACACAAGCAGATGACACCTGGTGCTGCGTATGAGTATGTGAGGTCAATCAGGCCAAGGGTCCTCTTAGCCTCTATCCAATGGCAGGCTGTTCAAGAGTTTTACCGACGTCAGGTGAAGGAGAATGGAAGGTCCAGCTGTTTGGACAATTTAGTTGTGAAAACCCAAAGTTTCCCTACCACCGGGGACATTGCAGCCTTTGATGACGGCTCAGTTGTGGTGGTAACAGATTTGGACCTAGATGGATACACTGGGAGCTGTAACTCCGGCATTGTGGGCAACGAGATATGGGCAGAGCTGAGCCTGGTGTATAGGGTTCAGTTCGCTGGTCAGGCGGCGCTGGCAAGGCTCTCATGCATGTGGCTGCGCTGTCATGCACGCCAGAAGATGTCAGGGGAGAAGCTGGGCAGGGAGAGCAGCTGCTCCGTGGGGACTGATCAGTTGGGAGGACTTGGTGTAGACATCCACGTGTATTGA 990 48.18 MHIEELKVGELESGEEELVTDVCGNENFASDAKMVLIGVGARVLFYPTLVYNVFRNKIQSEFRWWDWVDEFILLGAVPFPTDVPRLKQLGVRGVITLNEPYETLVSTSLYYAHGIDHLVIPTRDYLFAPSYGDICQAVDFIHKNASSGKTTYVHCKAGRGRSTTIVLCYLVQHKQMTPGAAYEYVRSIRPRVLLASIQWQAVQEFYRRQVKENGRSSCLDNLVVKTQSFPTTGDIAAFDDGSVVVVTDLDLDGYTGSCNSGIVGNEIWAELSLVYRVQFAGQAALARLSCMWLRCHARQKMSGEKLGRESSCSVGTDQLGGLGVDIHVY 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl8g00794 329 CDD PTPMT1 64 208 IPR044596 GO:0004721(InterPro)
Eupl8g00794 329 SMART dsp-5 68 208 IPR020422 GO:0006470(InterPro)
Eupl8g00794 329 FunFam Dual specificity phosphatase domain protein 64 211 - -
Eupl8g00794 329 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 288 - -
Eupl8g00794 329 ProSitePatterns Tyrosine specific protein phosphatases active site. 153 163 IPR016130 GO:0016311(InterPro)
Eupl8g00794 329 Pfam Dual specificity phosphatase, catalytic domain 104 207 IPR000340 GO:0016311(InterPro)
Eupl8g00794 329 ProSiteProfiles Dual specificity protein phosphatase domain profile. 64 211 IPR020422 GO:0006470(InterPro)
Eupl8g00794 329 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 132 200 IPR000387 GO:0016311(InterPro)
Eupl8g00794 329 Gene3D Protein tyrosine phosphatase superfamily 64 213 IPR029021 -
Eupl8g00794 329 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 57 208 IPR029021 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl8g00794 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr9:7896871 Eupl8g00794 Eupl-Chr8:22565921 transposed
Eupl Eupl-Chr14:30065003 Eupl8g00794 Eupl-Chr8:22565921 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00366 . 1 778 Protein tyrosine phosphatase (PTP) family AT3G55270 43.278 0.0 602.0
Eupl11g00096 . 14 811 Protein tyrosine phosphatase (PTP) family AT5G23720 63.93 0.0 1006.0
Eupl11g00862 . 1 412 Protein tyrosine phosphatase (PTP) family AT5G39400 65.947 0.0 576.0
Eupl10g00055 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 65.179 0.0 854.0
Eupl4g00083 . 459 538 Protein tyrosine phosphatase (PTP) family AT3G01510 35.366 5.04e-07 50.4
Eupl3g01160 . 29 611 Protein tyrosine phosphatase (PTP) family AT3G19420 67.285 0.0 827.0
Eupl9g00256 . 25 227 Protein tyrosine phosphatase (PTP) family AT5G56610 69.458 2.02e-100 291.0
Eupl5g00750 . 95 186 Protein tyrosine phosphatase (PTP) family AT3G23610 44.565 4.90e-18 80.1
Eupl2g00415 . 49 213 Protein tyrosine phosphatase (PTP) family AT1G05000 78.788 2.48e-99 285.0
Eupl2g00433 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 64.576 1.22e-121 346.0
Eupl8g01058 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 62.667 6.36e-139 394.0
Eupl4g00703 . 65 590 Protein tyrosine phosphatase (PTP) family AT3G01510 70.588 0.0 778.0
Eupl4g00154 . 14 916 Protein tyrosine phosphatase (PTP) family AT5G23720 61.538 0.0 1100.0
Eupl4g00085 . 459 538 Protein tyrosine phosphatase (PTP) family AT3G01510 35.366 5.04e-07 50.4
Eupl6g00218 . 466 538 Protein tyrosine phosphatase (PTP) family AT3G01510 36.986 1.86e-07 50.4
Eupl6g00335 . 1 241 Protein tyrosine phosphatase (PTP) family AT2G04550 66.265 2.06e-115 330.0
Eupl1g00572 . 99 187 Protein tyrosine phosphatase (PTP) family AT3G23610 43.82 3.00e-18 80.5
Eupl1g01234 . 45 209 Protein tyrosine phosphatase (PTP) family AT5G56610 26.744 2.13e-06 46.2
Eupl1g01345 . 1 837 Protein tyrosine phosphatase (PTP) family AT3G10550 67.599 0.0 1168.0
Eupl13g00647 . 29 611 Protein tyrosine phosphatase (PTP) family AT3G19420 68.491 0.0 853.0
Eupl3g00292 . 43 335 Protein tyrosine phosphatase (PTP) family AT1G71860 64.068 8.65e-140 399.0
Eupl5g01363 . 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.192 0.0 730.0
Eupl5g01208 . 69 239 Protein tyrosine phosphatase (PTP) family AT3G44620 74.269 8.06e-94 271.0
Eupl5g02019 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 64.636 0.0 840.0
Eupl5g01800 . 1 837 Protein tyrosine phosphatase (PTP) family AT3G10550 68.182 0.0 1186.0
Eupl5g02318 . 12 282 Protein tyrosine phosphatase (PTP) family AT3G10940 74.101 2.67e-148 415.0
Eupl14g01307 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 58.908 1.09e-136 389.0
Eupl7g00244 . 1 196 Protein tyrosine phosphatase (PTP) family AT5G16480 65.306 9.33e-94 270.0
Eupl8g00794 . 42 337 Protein tyrosine phosphatase (PTP) family AT2G35680 61.812 3.16e-130 373.0
Eupl7g01314 . 459 549 Protein tyrosine phosphatase (PTP) family AT3G01510 29.787 9.09e-06 46.2
Eupl7g01111 . 26 189 Protein tyrosine phosphatase (PTP) family AT3G23610 61.585 1.09e-74 221.0
Eupl5g01753 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 63.325 7.14e-168 472.0
Eupl6g00371 . 48 215 Protein tyrosine phosphatase (PTP) family AT1G05000 77.381 2.26e-99 285.0