AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl8g00805 ATGGGAAGGGCTGGCGGAGGACGAGGGGAAGGGATGGCAGGTGGTGGAGTTGAGGTAGGAAGGCCAGGCAGGGATGAAGGCTGGGGTGGAGGGAGAGAAGGTGGAGGAGGGGTTAAGACGGCCAAAGGCTGGAGCCTCCGGCATCTTCCATGCCGGAGAGGGCAGGGAAGGAGGAAGGGTAGGGAAGGGTTTCACAGGAATTTTTTGGGCCCAACTTACTTTTTCATTTTTTTTTCTTCTTTTGAAACCTCAACCTTAAGTCAATGGTGCTTATTAAAGGCTGCTCGTGCCTTGGCTAATTTGGCTGCACATGGAGATAGCAACAGTAACAATGCTGCTGTTGGACAAGAGGCAGGTGCACTTGAAGCATTAGTGCAGCTTACATGTTCTTATCACGAAGGAGTCAGGCAGGAAGCTGCTGGTGCTTTGTGGAATTTATCGTTCGATGACAGAAATCGCGAAGCAATTGCTGCAGCTGGTGGTGTTGAGGCCCTGGTTGCTCTTGCACAAACTTGCTCAAGCGCCTCCCAAGGACTTCAAGAAAGGGCTGCAGGCGCTTTGTGGGGATTGTCAGTATCAGAGGCAAACAGCATTGCTATTGGACGAGAGGGAGGTGTTGCGCCTCTTATTGCGCTGGCACGCTCAAATGCTGAAGATGTCCATGAGACAGCCGCAGGGGCACTTTGGAATCTTGCTTTTAATCCAGGTAATGCTCTGCGTATAGTGGAGGAAGGGGGAGTTCCAGCCCTTGTTGATCTTTGTTCTTCGTCAGTATCAAAGATGGCCCGCTTCATGGCTGCTCTAGCATTAGCTTACATGTTTGATGGGAGAATGGATGAAGTAGCATCGATAGGGCCTTCATCGGAAGGTATTTCAAAGAGTGTAAGCTTAGATGGTGCTAGAAGGATGGCCTTGAAGCATATCGAAGCTTTCGTGCATTCATTTTATGATCTACAATCCTTCTCTGCAGCTGCTGCATCATCAGCCCATGCATCCTTGGCACAAGTAGCAGAAGCAGCACGTATACAGGAAGCAGGACATCTGAGATGCAGTGGAGCTGAGATTGGGAGATTTGTTGCCATGCTTCGGAACTCTTCTTCCGTACTCAAGGCATGTGCTGCTTTTGCTCTTCTCCAGTTCACCATCCCAGGTGGCCGGCATGCAATCCACCATGCAAGACTCTTGCAGAAGGCCGGAGCTGCTCGGGTCCTACGTGCTGCAGCAGCAGCAGCAACAGCACCCATTAAAGCCAAAATCTTTGCGAAGATTGTACTCCGTAATCTCGAGCACCATAATGTAGAGGCTTCAATTTGA 1314 50.46 MGRAGGGRGEGMAGGGVEVGRPGRDEGWGGGREGGGGVKTAKGWSLRHLPCRRGQGRRKGREGFHRNFLGPTYFFIFFSSFETSTLSQWCLLKAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTCSYHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALAQTCSSASQGLQERAAGALWGLSVSEANSIAIGREGGVAPLIALARSNAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVDLCSSSVSKMARFMAALALAYMFDGRMDEVASIGPSSEGISKSVSLDGARRMALKHIEAFVHSFYDLQSFSAAAASSAHASLAQVAEAARIQEAGHLRCSGAEIGRFVAMLRNSSSVLKACAAFALLQFTIPGGRHAIHHARLLQKAGAARVLRAAAAAATAPIKAKIFAKIVLRNLEHHNVEASI 437
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl8g00805 437 MobiDBLite consensus disorder prediction 1 41 - -
Eupl8g00805 437 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 204 246 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 SUPERFAMILY ARM repeat 87 282 IPR016024 -
Eupl8g00805 437 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 119 161 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 160 205 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 SMART arm-5 149 192 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 SMART arm-5 108 148 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 SMART arm-5 193 233 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 SMART arm-5 234 275 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 Gene3D - 87 286 IPR011989 -
Eupl8g00805 437 PANTHER PROTEIN ARABIDILLO 1 93 434 IPR044583 -
Eupl8g00805 437 Pfam Armadillo-beta-catenin-like repeat 111 147 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 Pfam Armadillo-beta-catenin-like repeat 234 273 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 Pfam Armadillo-beta-catenin-like repeat 194 232 IPR000225 GO:0005515(InterPro)
Eupl8g00805 437 Pfam Armadillo-beta-catenin-like repeat 149 191 IPR000225 GO:0005515(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl8g00805 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr14:29713499 Eupl8g00805 Eupl-Chr8:22952675 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Eupl11g00416 . 381 547 U-box gene family AT1G23030 28.994 4.42e-07 51.2
Eupl11g00408 . 47 224 U-box gene family AT2G45910 28.177 1.93e-13 67.4
Eupl11g00343 . 78 428 U-box gene family AT1G04510 28.389 4.02e-22 97.8
Eupl11g00241 . 1 771 U-box gene family AT1G24330 64.639 0.0 989.0
Eupl11g00152 . 353 494 U-box gene family AT5G67530 46.575 2.76e-34 128.0
Eupl11g00118 . 529 799 U-box gene family AT2G23140 27.437 7.81e-17 82.4
Eupl11g01122 . 535 820 U-box gene family AT2G23140 39.456 1.12e-47 171.0
Eupl11g01014 . 210 437 U-box gene family AT1G04510 22.222 5.84e-11 64.3
Eupl11g01007 . 1 1000 U-box gene family AT1G68940 51.389 0.0 1008.0
Eupl11g00861 . 1 72 U-box gene family AT5G15400 79.167 9.77e-30 113.0
Eupl11g00860 . 108 1032 U-box gene family AT5G15400 75.586 0.0 1439.0
Eupl11g00592 . 33 556 U-box gene family AT5G65200 54.393 0.0 536.0
Eupl11g00543 . 1 684 U-box gene family AT1G60190 45.31 0.0 552.0
Eupl6g01021 . 237 517 U-box gene family AT2G33340 22.074 1.04e-08 55.5
Eupl6g00979 . 236 488 U-box gene family AT2G33340 27.473 2.91e-14 73.6
Eupl6g01204 . 1 729 U-box gene family AT1G29340 66.083 0.0 897.0
Eupl6g00755 . 527 750 U-box gene family AT2G23140 28.384 2.09e-10 60.5
Eupl6g00754 . 514 646 U-box gene family AT3G54790 28.467 5.33e-06 43.9
Eupl6g01135 . 9 80 U-box gene family AT3G07370 31.944 5.88e-07 50.1
Eupl6g01125 . 446 712 U-box gene family AT1G67530 29.889 1.10e-24 105.0
Eupl6g01871 . 4 829 U-box gene family AT2G23140 60.906 0.0 955.0
Eupl7g00504 . 236 507 U-box gene family AT2G33340 26.855 2.54e-18 87.4
Eupl4g00084 . 28 807 U-box gene family AT1G76390 26.087 2.20e-42 165.0
Eupl4g01384 . 218 1030 U-box gene family AT1G68940 58.16 0.0 1014.0
Eupl3g01205 . 1 421 U-box gene family AT1G49780 67.221 0.0 548.0
Eupl3g01312 . 352 494 U-box gene family AT5G67530 42.361 2.39e-29 116.0
Eupl10g00427 . 847 961 U-box gene family AT2G28830 72.65 7.24e-52 173.0
Eupl2g00147 . 498 759 U-box gene family AT2G23140 31.365 2.91e-15 76.3
Eupl3g00590 . 12 408 U-box gene family AT1G49780 34.568 4.96e-56 188.0
Eupl3g00658 . 1 420 U-box gene family AT5G64660 49.645 8.41e-136 394.0
Eupl5g00743 . 334 607 U-box gene family AT1G23030 36.014 1.90e-39 144.0
Eupl5g00757 . 330 494 U-box gene family AT5G67530 39.444 1.79e-27 106.0
Eupl5g00682 . 140 797 U-box gene family AT1G20780 28.636 8.83e-47 177.0
Eupl6g00024 . 239 427 U-box gene family AT2G33340 25.701 1.14e-07 52.4
Eupl8g00671 . 490 747 U-box gene family AT3G54790 29.851 7.92e-19 88.6
Eupl2g00410 . 546 759 U-box gene family AT2G23140 27.982 1.31e-15 78.6
Eupl2g00498 . 475 823 U-box gene family AT2G23140 46.328 7.22e-85 275.0
Eupl2g00517 . 549 779 U-box gene family AT2G23140 28.017 1.04e-12 68.6
Eupl2g00191 . 1 367 U-box gene family AT4G21350 61.308 3.25e-146 416.0
Eupl2g00608 . 543 820 U-box gene family AT2G23140 37.979 1.49e-41 153.0
Eupl2g00157 . 483 759 U-box gene family AT2G23140 30.42 3.31e-15 77.0
Eupl8g01055 . 7 405 U-box gene family AT2G35930 34.314 2.05e-72 231.0
Eupl1g01459 . 10 629 U-box gene family AT3G54850 67.258 0.0 830.0
Eupl12g00319 . 236 470 U-box gene family AT2G33340 30.126 1.52e-19 91.3
Eupl13g01932 . 350 501 U-box gene family AT5G67530 40.0 5.80e-29 119.0
Eupl13g01654 . 579 711 U-box gene family AT2G23140 39.259 1.02e-10 65.5
Eupl3g01905 . 11 658 U-box gene family AT4G36550 38.384 1.08e-133 410.0
Eupl3g01854 . 209 514 U-box gene family AT2G33340 24.242 1.64e-16 79.0
Eupl6g00683 . 1 367 U-box gene family AT4G21350 61.58 4.05e-151 429.0
Eupl4g01780 . 572 718 U-box gene family AT2G23140 30.872 1.13e-10 63.5
Eupl4g01196 . 1 1038 U-box gene family AT5G15400 75.951 0.0 1626.0
Eupl4g01021 . 346 500 U-box gene family AT5G67530 26.667 1.34e-11 61.6
Eupl4g00822 . 33 556 U-box gene family AT5G65200 54.731 0.0 523.0
Eupl4g00747 . 8 684 U-box gene family AT1G60190 45.693 0.0 572.0
Eupl4g00565 . 416 547 U-box gene family AT1G23030 32.09 2.85e-07 51.6
Eupl4g00556 . 22 180 U-box gene family AT5G65500 32.075 7.32e-14 68.6
Eupl4g00554 . 477 752 U-box gene family AT3G54790 33.219 7.71e-27 109.0
Eupl4g00471 . 255 460 U-box gene family AT1G04510 26.027 1.62e-09 55.8
Eupl4g00341 . 240 423 U-box gene family AT2G33340 26.471 1.24e-11 63.9
Eupl4g00337 . 1 768 U-box gene family AT1G27910 65.513 0.0 1000.0
Eupl4g00180 . 571 822 U-box gene family AT2G23140 28.289 4.95e-16 79.7
Eupl4g00086 . 28 807 U-box gene family AT1G76390 26.087 2.20e-42 165.0
Eupl6g00197 . 239 427 U-box gene family AT2G33340 25.701 9.82e-08 52.4
Eupl6g00285 . 514 823 U-box gene family AT2G23140 48.553 1.10e-84 275.0
Eupl4g01752 . 11 620 U-box gene family AT1G71020 61.538 0.0 723.0
Eupl9g00705 . 734 801 U-box gene family AT2G28830 39.0 1.07e-12 68.6
Eupl1g00563 . 353 485 U-box gene family AT5G67530 45.455 8.14e-29 110.0
Eupl1g01060 . 26 805 U-box gene family AT1G76390 30.625 1.63e-97 325.0
Eupl1g01076 . 353 475 U-box gene family AT5G67530 47.015 2.09e-27 108.0
Eupl1g01176 . 346 496 U-box gene family AT5G67530 49.007 1.68e-50 168.0
Eupl8g00449 . 9 115 U-box gene family AT3G07370 29.907 2.29e-06 47.0
Eupl3g00945 . 1 448 U-box gene family AT3G49810 72.707 0.0 649.0
Eupl14g00726 . 346 500 U-box gene family AT5G67530 52.903 1.69e-55 181.0
Eupl10g00862 . 257 326 U-box gene family AT3G46510 54.93 1.79e-17 86.3
Eupl10g00628 . 367 627 U-box gene family AT3G46510 30.712 8.39e-21 90.9
Eupl10g00630 . 357 492 U-box gene family AT5G67530 45.946 1.65e-28 119.0
Eupl8g00184 . 27 807 U-box gene family AT1G76390 29.898 3.61e-71 251.0
Eupl8g00210 . 260 507 U-box gene family AT2G33340 22.835 8.90e-07 50.4
Eupl8g00205 . 11 401 U-box gene family AT2G35930 43.358 7.33e-111 329.0
Eupl13g00221 . 209 514 U-box gene family AT2G33340 24.848 7.25e-17 80.1
Eupl13g00461 . 20 784 U-box gene family AT5G65500 46.84 0.0 705.0
Eupl13g00513 . 352 494 U-box gene family AT5G67530 42.581 4.70e-32 125.0
Eupl13g00612 . 1 421 U-box gene family AT1G49780 65.877 0.0 538.0
Eupl13g00059 . 353 494 U-box gene family AT5G67530 40.523 4.65e-27 106.0
Eupl13g00801 . 5 811 U-box gene family AT1G76390 65.019 0.0 1022.0
Eupl13g00081 . 353 477 U-box gene family AT5G67530 49.265 3.36e-31 116.0
Eupl3g01473 . 390 585 U-box gene family AT3G46510 30.5 1.71e-10 64.3
Eupl10g01308 . 734 801 U-box gene family AT2G28830 40.0 4.09e-13 70.5
Eupl9g00490 . 340 501 U-box gene family AT5G67530 47.273 1.83e-40 152.0
Eupl14g00103 . 27 807 U-box gene family AT1G76390 30.33 1.10e-70 249.0
Eupl14g00118 . 260 507 U-box gene family AT2G33340 22.047 2.26e-07 52.4
Eupl14g00319 . 9 94 U-box gene family AT3G07370 30.233 4.55e-07 48.9
Eupl14g00417 . 1 832 U-box gene family AT2G45910 50.22 0.0 829.0
Eupl7g00877 . 246 977 U-box gene family AT1G68940 27.139 2.30e-44 172.0
Eupl7g00895 . 355 494 U-box gene family AT5G67530 48.026 1.52e-32 131.0
Eupl5g01284 . 1 659 U-box gene family AT3G46510 69.532 0.0 917.0
Eupl5g01273 . 44 830 U-box gene family AT2G45910 39.606 0.0 560.0
Eupl5g01205 . 346 496 U-box gene family AT5G67530 45.695 1.03e-39 152.0
Eupl5g01148 . 233 464 U-box gene family AT2G33340 26.022 2.07e-13 69.3
Eupl5g01014 . 8 410 U-box gene family AT2G35930 46.715 7.61e-123 360.0
Eupl5g01013 . 8 411 U-box gene family AT2G35930 58.413 4.86e-177 498.0
Eupl7g00713 . 4 828 U-box gene family AT2G23140 46.281 0.0 646.0
Eupl7g00616 . 1 517 U-box gene family AT1G04510 74.952 0.0 808.0
Eupl7g00441 . 1 460 U-box gene family AT3G07360 60.304 0.0 550.0
Eupl7g00771 . 353 480 U-box gene family AT5G67530 49.64 1.45e-32 120.0
Eupl3g01036 . 217 423 U-box gene family AT2G33340 25.221 6.18e-07 49.3
Eupl3g01021 . 546 825 U-box gene family AT2G23140 54.448 2.57e-88 281.0
Eupl3g01007 . 1 595 U-box gene family AT5G67530 75.5 0.0 920.0
Eupl5g02183 . 6 633 U-box gene family AT3G46510 38.531 2.70e-133 405.0
Eupl5g02323 . 10 663 U-box gene family AT5G01830 57.879 0.0 729.0
Eupl14g01296 . 546 742 U-box gene family AT2G23140 35.784 1.26e-20 95.9
Eupl10g00275 . 353 625 U-box gene family AT3G46510 34.859 2.45e-33 132.0
Eupl7g01766 . 353 494 U-box gene family AT5G67530 45.89 2.01e-31 120.0
Eupl2g00859 . 9 191 U-box gene family AT3G07370 26.776 2.73e-08 53.9
Eupl2g00848 . 439 712 U-box gene family AT1G67530 30.216 2.99e-21 93.6
Eupl2g00943 . 19 652 U-box gene family AT1G29340 66.614 0.0 813.0
Eupl2g00941 . 1 728 U-box gene family AT1G29340 66.712 0.0 912.0
Eupl3g02456 . 5 811 U-box gene family AT1G76390 64.03 0.0 1023.0
Eupl3g02409 . 53 660 U-box gene family AT5G42340 64.821 0.0 778.0
Eupl3g02187 . 353 494 U-box gene family AT5G67530 40.523 4.56e-27 106.0
Eupl3g02160 . 353 477 U-box gene family AT5G67530 46.324 6.19e-29 109.0
Eupl3g02159 . 242 607 U-box gene family AT1G23030 26.131 2.12e-17 85.9
Eupl9g01073 . 224 447 U-box gene family AT1G04510 25.439 1.88e-11 64.7
Eupl8g00790 . 19 835 U-box gene family AT4G25160 54.446 0.0 867.0
Eupl8g00805 . 571 742 U-box gene family AT2G23140 36.517 3.84e-21 94.7
Eupl14g00591 . 490 760 U-box gene family AT3G54790 31.93 1.21e-21 97.4
Eupl7g00496 . 236 507 U-box gene family AT2G33340 26.855 2.76e-18 87.0
Eupl3g00404 . 9 107 U-box gene family AT3G07370 34.0 2.76e-09 56.2
Eupl7g01047 . 416 614 U-box gene family AT5G67340 30.0 6.02e-13 70.5
Eupl7g01460 . 308 423 U-box gene family AT2G33340 25.424 1.93e-06 48.9
Eupl5g01653 . 11 629 U-box gene family AT3G54850 66.236 0.0 801.0
Eupl9g00129 . 212 384 U-box gene family AT3G19380 33.898 9.39e-18 82.8
Eupl13g00992 . 1 448 U-box gene family AT3G49810 74.667 0.0 662.0
Eupl13g00940 . 217 444 U-box gene family AT2G33340 24.691 3.27e-07 50.1
Eupl13g00955 . 502 825 U-box gene family AT2G23140 48.615 1.80e-87 278.0
Eupl3g00040 . 6 276 U-box gene family AT3G07370 69.742 6.98e-143 401.0
Eupl6g00736 . 527 809 U-box gene family AT2G23140 26.804 1.91e-13 71.6
Eupl13g01426 . 1 409 U-box gene family AT5G09800 52.392 3.61e-137 397.0
Eupl12g00443 . 1 517 U-box gene family AT1G04510 73.805 0.0 797.0
Eupl6g00378 . 541 759 U-box gene family AT2G23140 28.251 1.52e-15 78.2
Eupl11g01557 . 241 348 U-box gene family AT1G23030 41.739 5.02e-18 87.4
Eupl3g00462 . 392 575 U-box gene family AT3G46510 29.245 7.94e-12 68.6
Eupl12g01275 . 440 637 U-box gene family AT5G67340 21.951 7.73e-06 47.0
Eupl12g01229 . 345 492 U-box gene family AT5G67530 30.464 1.95e-17 79.0
Eupl12g01222 . 432 474 U-box gene family AT5G67530 51.163 1.62e-08 49.7
Eupl12g01215 . 14 107 U-box gene family AT3G07370 35.106 6.89e-10 58.2
Eupl12g00812 . 361 570 U-box gene family AT3G46510 28.638 3.87e-13 70.9
Eupl1g00331 . 226 515 U-box gene family AT2G33340 31.333 8.67e-32 127.0
Eupl4g01891 . 5 435 U-box gene family AT5G37490 51.247 8.66e-143 413.0