AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl8g00809 ATGATGGAGTGGAAATTGTTTGATTCGAGATCGGTGTATTCCTCGAAGATAATGTGTTTGGGGAGGACTTGTTCGATTTCGTTATCTAAACGCGAGGGTGGCGGTGTCAAAGTTTCAAGACAGTTCTGTTTTCGTCGAGGGGTTTTGCTCAAGGCTTCTTATTCAACCACAAGAAAATCAAATCAATCCATTGATTGGGTTGGCCAGTTCAAGTTCATCTTTGGGAACAGTTTACCTGGGATCATTGGAACAAATGGGGCCAGTTCAAATTTGTCCTTCAGAGAAAGCAGTGTACTTGATGCCTCTGAAGACGAGTACGAGGGAGTTATTGTTAATCCAGAAAGATTACCATCCAATCCAAAACCCTTTGCTTCTATCCTTCAGTCCTCTCTTTCTCATTGGAAATTAAAGGGAAAAAGGGGGGTTTGGCTTAAGTTGCCACTGGAACGGTCTGAGCTCGTTCCTATTGCAGTGAAGGAGGGCTTCCAATACCACCATGCAGAGCAAGGATATGTTATGTTGACATACTGGATTCCTGAAGAACCTTGCATGCTTCCTGCTAATGCTTCACATCAAGTGGGGGTCGGGGGATTTGTGATCAACGACAAAAATGAGGTGCTTGTGGTGCAAGAGAAACACTGTTCTCCAGCATTTGTTGGTGTTTGGAAAATACCAACAGGTTTCATTGTCGAGTCTGAGGAGATCTTTACTGGAGCTGTAAGAGAAATTAAGGAGGAAACCGGTATTGATGCAGAATTTGTAGAATTGATTGCTTTTAGGCATGCTCACCATGAGGCTTTTGACAAGTCAGACTTGTTCTTTATCTGCATGCTAAGACCTTTATCAACTCAAATCAAAGTAGATGACAGAGAAATTCAAGCTGCCAAGGTAAATATCTTACCTCAGATCACAAGAAAAGTTGCTTCATACTACTCGTGTATTGTAAATATCTTACAAAACCATGTGATTACCAGCACATATTTGAACTCTTTATGTCCTCCAAAAAAACAACAATGGACTATGAGATGGGGTGGTGCCCAAGTGGTTGGCCTCACCCGTAATAACCATTTGACCATGACCAAATGGTGGTGCTTGGGCATGACCTTGAACTCATTGCTATGA 1122 42.25 MMEWKLFDSRSVYSSKIMCLGRTCSISLSKREGGGVKVSRQFCFRRGVLLKASYSTTRKSNQSIDWVGQFKFIFGNSLPGIIGTNGASSNLSFRESSVLDASEDEYEGVIVNPERLPSNPKPFASILQSSLSHWKLKGKRGVWLKLPLERSELVPIAVKEGFQYHHAEQGYVMLTYWIPEEPCMLPANASHQVGVGGFVINDKNEVLVVQEKHCSPAFVGVWKIPTGFIVESEEIFTGAVREIKEETGIDAEFVELIAFRHAHHEAFDKSDLFFICMLRPLSTQIKVDDREIQAAKVNILPQITRKVASYYSCIVNILQNHVITSTYLNSLCPPKKQQWTMRWGGAQVVGLTRNNHLTMTKWWCLGMTLNSLL 373
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl8g00809 373 Gene3D - 96 183 - -
Eupl8g00809 373 PANTHER NUDIX HYDROLASE RELATED 88 323 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Eupl8g00809 373 Pfam Nudix hydrolase domain 99 178 IPR040618 -
Eupl8g00809 373 ProSitePatterns Nudix box signature. 227 248 IPR020084 GO:0016787(InterPro)
Eupl8g00809 373 FunFam nudix hydrolase 2 96 183 - -
Eupl8g00809 373 FunFam Nudix hydrolase 8 192 323 - -
Eupl8g00809 373 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 192 319 - -
Eupl8g00809 373 Pfam NUDIX domain 191 296 IPR000086 -
Eupl8g00809 373 SUPERFAMILY Nudix 158 296 IPR015797 -
Eupl8g00809 373 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 188 206 IPR003293 -
Eupl8g00809 373 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 150 168 IPR003293 -
Eupl8g00809 373 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 248 271 IPR003293 -
Eupl8g00809 373 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 172 188 IPR003293 -
Eupl8g00809 373 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 276 300 IPR003293 -
Eupl8g00809 373 ProSiteProfiles Nudix hydrolase domain profile. 190 321 IPR000086 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl8g00809 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr10:29477819 Eupl8g00809 Eupl-Chr8:23165270 dispersed
Eupl Eupl-Chr14:29234422 Eupl8g00809 Eupl-Chr8:23165270 dispersed
Eupl Eupl-Chr2:6573070 Eupl8g00809 Eupl-Chr8:23165270 dispersed
Eupl Eupl-Chr6:673960 Eupl8g00809 Eupl-Chr8:23165270 dispersed
Eupl Eupl-Chr6:3301157 Eupl8g00809 Eupl-Chr8:23165270 dispersed
Eupl Eupl-Chr14:29208163 Eupl8g00809 Eupl-Chr8:23165270 wgd