AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl8g00937 ATGTATAGAGATCGAGGTGGTGGCGGATCGAAGTCGGAGATCGGTCCTCTTGATCGTAAGCGCATCAATGATGCCCTAGACAAGCACTTGGAGAAATCGTCGCCGTCCACATCAAAGGGATTAAATGGCAAGGACAAGGACAGATTATCCGTACCATCCACCTCCGCTGCCAAGCCACCCCCTGATCACAGAGACACTCGTTCCGCGTCTCTCTCCAAGAACAAGTGTTCCGACGAGGAATCTGAAACGGACAGTGAAGAGTCGGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTGTAATCTCCGAGGGAATGAGTTCTTTTGTGAAGTGGATGATGAGTATATCCAAGATGATTTTAACCTTTGTGGCTTAAGCAGTCAAGTTCCATATTATGATTATGCACTTGATTTGATTTTGGATGTCGAATCCTCTCATGGTGATATGTTCACAGAGGAACAGAATGAGTTGGTTGAATCGGCGGCAGAGATGTTGTATGGTCTGATTCATGTCCGATACATTTTAACCAGCAAAGGAATGTCTGCGATGTTAGACAAGTACAAGAACTATGACTTCGGGAGATGTCCAAGAGTTTACTGTTGTGGACAACCCTGTCTTCCAGTTGGTCAGTCAGACATTCCTCGGTCCAGTACCGTGAAAATCTACTGTCCCAAATGTGAAGATATTTATTACCCGCGATCCAAGTATCAAGGCAGTATCCTTCCCTTCTATTTCATTAATTTAGAGAGCCCATTTTTACTGCATACGTCCAGCAGGTGGTTCAACTATGCCTTCTCACTAATCACTAATTGCTGTAACCTGAATCTGTTCCCATGGTTAATTTTCATGCATTTATTGGTCAAACATGGGTGGAGGATTACTGAATTTGTCTACCCTTCAGCTGCCATGGACTGTGTTGCCATATGTGCGTGTAGTTGGGTGGGTGGGAAAGGGGAAAGGGAAGGTTCGTGCATGAAGAAGAAAATTTTTTCCTTCTTGCTTATGTGTGCACTGCATGGTGGATGTGCTCATTGA 1050 44.67 MYRDRGGGGSKSEIGPLDRKRINDALDKHLEKSSPSTSKGLNGKDKDRLSVPSTSAAKPPPDHRDTRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILPFYFINLESPFLLHTSSRWFNYAFSLITNCCNLNLFPWLIFMHLLVKHGWRITEFVYPSAAMDCVAICACSWVGGKGEREGSCMKKKIFSFLLMCALHGGCAH 349
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl8g00937 349 Gene3D - 197 293 - -
Eupl8g00937 349 PANTHER CASEIN KINASE II SUBUNIT BETA 79 251 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Eupl8g00937 349 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 PRINTS Casein kinase II regulatory subunit family signature 218 239 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 MobiDBLite consensus disorder prediction 60 80 - -
Eupl8g00937 349 SUPERFAMILY Casein kinase II beta subunit 97 251 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 MobiDBLite consensus disorder prediction 1 95 - -
Eupl8g00937 349 FunFam Casein kinase II subunit beta 197 248 - -
Eupl8g00937 349 MobiDBLite consensus disorder prediction 14 34 - -
Eupl8g00937 349 ProSitePatterns Casein kinase II regulatory subunit signature. 200 231 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 FunFam Casein kinase II subunit beta 92 196 - -
Eupl8g00937 349 SMART CK-II-beta-2 99 249 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Eupl8g00937 349 Pfam Casein kinase II regulatory subunit 99 245 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl8g00937 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Eupl Eupl-Chr4:746600 Eupl8g00937 Eupl-Chr8:26388496 dispersed
Eupl Eupl-Chr14:26311149 Eupl8g00937 Eupl-Chr8:26388496 wgd
Eupl Eupl-Chr14:25871750 Eupl8g00937 Eupl-Chr8:26388496 wgd