AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00065 ATGGAGATAGCACCGGCGCACGACGGTGTCGGAACCCTACCGGAATCTTCATCTGCTTCCACTGTCTCCGTCGATAACAGCAATTTGTCGACCAACATGTACGATGACGATAATGAAGAGGATGAGGATGTTTGTCGGATCTGCCGGAATCCAGGAGACGCCGATAATCCTCTCCGGTATCCGTGTGCTTGTAGCGGCAGTATTAAGTTTGTTCACCAGGACTGTCTTCTTCAGTGGCTGAATCACAGCAACGCTCGTCAGTGCGAGGTATGCAAGCACCCCTTTTCATTCTCCCCTTTATATGCTGAAAATGCCCCTGGAAGGCTTCCTTTTCAGGAATTTATCATTGGGATAGCAATGAAAGCCTATATTGTGATGCAGTTCTTCATACGTTTTATATTTGTGCTATCCATATGGCTTTTAATCATACCGTTTATCACTTTCTGGATATGGCGATTTTCATTTGTTAGGAGTTTTAATGAAGCCCAAAGACTTTTCTCGAGTCATATTTCAACTACACTCATCCTCACAGATTGTCTTCATGGGTTCCTACTCTCAGCAAGTATTGTGTTTATTTTTCTTGGTGCCACGTCTTTGAGGGACTATTTTCGACATTTAAGAGAACTTGGAGGGCAGGAAGGTGACAGAGAGGAAGAAGTAGATAGAAACGGTGTTCGTGTTGCAAGGAGACAAGGTAACCGGAACCTTGTTGGTGAAGGGAATGGTGAAGATGTTGGTGGGGCCCATGGTATTGGTGGGGCCGGTCAGATGATTAGAAGGAATGCGGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGACTTGAGGCACATGTTGAACAGATATTTGATGGTTTGGATGATGGTGATGGTGCAGAGGATGTTCCTTTTGATGAACTGGTTGGTATGCAGGGGCCCATTTTTCATTTGGTGGAAAATGCATTTACTGTTCTTGCAAGCAACATGATATTTCTTGGTGTTGTAGTACTTGTGCCTTTTCACCTAGGACGTTTTATCCTCCATCAGTTATCATTTATTCTATCATCTGCCATGAGCCCAATGTTTTCAACTGTTGTACCCATTACGCAACAAGCACTTTCATTAGCCAATATTACATTAAAAAATACACTTACTGCAGCCGCAAATTTTACAACTGACAAAAATCCAAATGTAAATGATACGGCTCTCGTTTCAGTTAATATTCTAAGAGGAGATTCCCGACTATCTGATGCTACAACTCTTGCAGTTGGATATATTTCCATTTTCACATTGGTTATTCTCTATTTAGGAGTTATAGCACTTGTTAGGTATGCCAGGGGTGAGCCCTTGACCATGGGAAGGTTTTATGGTATTACTTCAATTGTAGAAACAATCCCATCTCTTTTTCGACAGTTCTTAGCTGCAATGAGACATTTAATGACTATGATAAAGGTTGCTTTTCTATTGGTCATTGAGCTAGGGGTGTTCCCTCTAATGTGTGGATGGTGGTTAGATGTTTGTACTATAAGGATGTTCGGGAAGTCAATCAATCAAAGAATTGACTTCTTTTCGGTTTCTCCGCTGGCAAGCTCATTGATTCATTGGGCTGTTGGGATTGTCTACATGTTGCAAATATCCATATTTGTTAGTCTTCTTCGAGGGGTTTTGCGGAACGGAGTCCTTTATTTTCTGCGGGATCCAGCTGATCCTAATTACAATCCATTTAGGGATTTAATTGATGATCCTGTGTATAAGCATGCTCGCAGGGTTCTCTTGTCAGTTGCTGTTTATGGGAGCTTAATTGTAATGCTGGTATTTTTGCCTGTTAAACTTGCTATGCGAATGGCTCCTTCTATCTTCCCTCTTGATATATCAGTATCTGACCCATTCACCGAGATTCCTGCTGATATGCTTCTCTTCCAAATTTGCATCCCATTTGCTGTTGAGCATTTTAAGCTGCGGGCAACAATTAAAGCACTTCTGTACTATTGGTTTACTGCAGTTGGCTGGGCCCTCGGTTTAACAGATTACTTATTGCCCAGACCTGAAGACATTGGTGGACAAGAAAATGAGAATGATCCAGCAAGACGAGATAGGATACATGGTCAAATAGGTGGTCAACCTGGGGGTCAACATCAAGCTGTAGCAGGATATTTACCGCCTGATGATTTGAACCGAGCTAATTCTGCAGAAGAAGATGATGGTGATGAATCTGATTCAGAGAGGTATATGTTTGTTCTGTGTATTGTGCTGCTTTTGTTGGTGGCTTGGTTGACATTGCTGATCTTCAATTCTGCTTTAATTGTGGTGCCTATATCCCTTGGACGAGTGTTATTCAATGCAGTTCCCCTTCTCCCTATCACACATGGCATCAAATGCAATGACATATATTCGTTTGTTATTGGAAGTTATGTCATCTGGATGACACTGGCGGGCATACGGTATTGCATTAATCAAATTAGAACAAGGAGAGCTACTGTATTACTAGGTCAAATTTGGATATGGTGTTCCATTGTTGTCAAGAGTTCTGTCCTGTTATCAATTTGGATTTTTGTTATCCCCGTGTTGATTGGTCTGTTATTTGAACTTCTGGTTATTGTACCAATGAGGGTGCCTGTGGATGAAAGCCCAGTGTTTCTGTTGTATCAGGATTGGGCTCTTGGACTTGTTTTTCTTAAGATATGGACTCGACTGGTAATGCTGGATCATGTGATGCCTCTTATGGATGACAGCTGGCGAGTGAAATTCGAGAGAGTAAGGGAAGACGGTTTCTCAAGGTTACAAGCCTTTTGGGTCCTACGAGAGATCGTGATCCCCATCATTATTAAACTCCTTACGGCTCTCTGTGTCCCTTATGTGCTAGCCCGTGGAGTGTTTCCTGTATTTGGGTACCCGTTAGTGGTTAACTCAGCTGTCTACAGATTTGCATGGCTAGGGTGCCTTGGTCTGAGTTTGTTGTGTTTTTGTGCCAAACGGTTCCATGTGTGGTTCACCAACCTTCACAACTCGATTAGAGATGACCGATATTTGATTGGTCGAAGGCTTCATAACTTTGGGGAAGATGATACACAACATGAGGCTGAGACTGCAAATGTACCTGACCCACGGGACACTGACGTTGGCTTGAGGCATAGACGCAATCTTCCAGCCGTGGGTTAA 3141 42.85 MEIAPAHDGVGTLPESSSASTVSVDNSNLSTNMYDDDNEEDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSFSPLYAENAPGRLPFQEFIIGIAMKAYIVMQFFIRFIFVLSIWLLIIPFITFWIWRFSFVRSFNEAQRLFSSHISTTLILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEGDREEEVDRNGVRVARRQGNRNLVGEGNGEDVGGAHGIGGAGQMIRRNAENVAARWEMQAARLEAHVEQIFDGLDDGDGAEDVPFDELVGMQGPIFHLVENAFTVLASNMIFLGVVVLVPFHLGRFILHQLSFILSSAMSPMFSTVVPITQQALSLANITLKNTLTAAANFTTDKNPNVNDTALVSVNILRGDSRLSDATTLAVGYISIFTLVILYLGVIALVRYARGEPLTMGRFYGITSIVETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKSINQRIDFFSVSPLASSLIHWAVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVYKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATIKALLYYWFTAVGWALGLTDYLLPRPEDIGGQENENDPARRDRIHGQIGGQPGGQHQAVAGYLPPDDLNRANSAEEDDGDESDSERYMFVLCIVLLLLVAWLTLLIFNSALIVVPISLGRVLFNAVPLLPITHGIKCNDIYSFVIGSYVIWMTLAGIRYCINQIRTRRATVLLGQIWIWCSIVVKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLVFLKIWTRLVMLDHVMPLMDDSWRVKFERVREDGFSRLQAFWVLREIVIPIIIKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLGLSLLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDDTQHEAETANVPDPRDTDVGLRHRRNLPAVG 1046
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00065 1046 Coils Coil 259 279 - -
Fli1g00065 1046 ProSiteProfiles Zinc finger RING-CH-type profile. 37 98 IPR011016 GO:0008270(InterPro)
Fli1g00065 1046 MobiDBLite consensus disorder prediction 13 33 - -
Fli1g00065 1046 FunFam Probable E3 ubiquitin ligase SUD1 30 103 - -
Fli1g00065 1046 CDD RING-CH-C4HC3-MARCH6 44 93 - -
Fli1g00065 1046 SMART ringv-2 44 92 IPR011016 GO:0008270(InterPro)
Fli1g00065 1046 MobiDBLite consensus disorder prediction 679 706 - -
Fli1g00065 1046 Pfam RING-variant domain 45 91 IPR011016 GO:0008270(InterPro)
Fli1g00065 1046 PANTHER SSM4 PROTEIN 37 1023 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Fli1g00065 1046 MobiDBLite consensus disorder prediction 1 37 - -
Fli1g00065 1046 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 29 102 IPR013083 -
Fli1g00065 1046 ProSiteProfiles Zinc finger RING-type profile. 45 92 IPR001841 -
Fli1g00065 1046 MobiDBLite consensus disorder prediction 1016 1046 - -
Fli1g00065 1046 SUPERFAMILY RING-U-box 39 96 - -
Fli1g00065 1046 MobiDBLite consensus disorder prediction 680 694 - -
Fli1g00065 1046 MobiDBLite consensus disorder prediction 1016 1038 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00065 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
88323 Fli1g00065 Fli4g01060
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr1:1028978 Fli4g01060 Fli-Chr4:73484097 dispersed
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fli1g00065 ACH 67 1102 HMGR gene family AT4G34100 72.457 0.0 1511.0
Fli1g02686 . 68 133 HMGR gene family AT4G34100 35.821 2.78e-11 60.5
Fli1g03225 . 68 118 HMGR gene family AT4G34100 41.176 1.91e-11 56.2
Fli2g01002 . 68 130 HMGR gene family AT4G34100 41.27 6.88e-11 60.5
Fli2g01216 . 68 118 HMGR gene family AT4G34100 41.176 7.89e-11 56.2
Fli2g01814 ACH,WGDA 40 129 HMGR gene family AT4G34100 30.0 3.35e-09 55.5
Fli2g02370 . 51 632 HMGR gene family AT1G76490 71.452 0.0 855.0
Fli2g03657 . 51 632 HMGR gene family AT1G76490 74.106 0.0 874.0
Fli4g01060 ACH 294 447 HMGR gene family AT4G34100 64.103 5.37e-58 192.0
Fli5g00418 ACH 68 129 HMGR gene family AT4G34100 35.484 4.33e-08 52.0
Fli6g01401 . 68 129 HMGR gene family AT4G34100 40.323 5.32e-12 62.4
Fli8g00116 . 68 133 HMGR gene family AT4G34100 37.879 4.37e-10 58.2
Fli10g01438 . 51 631 HMGR gene family AT1G76490 65.06 0.0 781.0
Fli10g01674 . 68 124 HMGR gene family AT4G34100 43.86 1.64e-12 61.6
Fli11g02317 . 68 118 HMGR gene family AT4G34100 45.098 3.87e-10 58.5
Fli12g00290 . 51 632 HMGR gene family AT1G76490 69.064 0.0 829.0
Fli12g02071 WGDA 68 141 HMGR gene family AT4G34100 33.784 6.93e-10 57.8
Fli14g00324 . 57 164 HMGR gene family AT2G17370 41.322 1.18e-18 79.0
Fli16g00410 . 68 125 HMGR gene family AT4G34100 41.379 5.41e-10 57.4
Fli16g00992 . 68 129 HMGR gene family AT4G34100 37.097 3.00e-09 55.5
Fli17g00471 . 68 129 HMGR gene family AT4G34100 41.935 1.81e-10 59.3
Fli10000205.1g00001 . 68 148 HMGR gene family AT4G34100 31.707 1.01e-09 56.2
Fli10000349.1g00005 . 51 633 HMGR gene family AT1G76490 73.401 0.0 873.0
Fli10001176.1g00001 . 68 129 HMGR gene family AT4G34100 41.935 1.81e-10 59.3