Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Fli1g00136	ATGGCTAAAAATTCAGTTGCTTTCTTTGCATTTCTACTACTTCTCTTCGTTCTTGCTATCTCAGAAATCGGATCCGTGAATGGAGAATTATGTGAAAAGGCGAGCAAGACATGGTCTGGAAATTGTGGCAACACGAGACACTGTGACGACCAGTGCAAGTCGTGGGAGGGTGCAGCCCATGGCGCTTGTCACGTCCGCAAAGGGAAACACATGTGCTTTTGCTACTTCAAATGTCGCAAAGCCGAGAAGATGGCTCAGGATAAACTCAAAGCTGAAGAGCTCGCAAAGGAGAAGGCTGAAGCGGCAAAGGTTGTCACACCATGA	324	47.53	MAKNSVAFFAFLLLLFVLAISEIGSVNGELCEKASKTWSGNCGNTRHCDDQCKSWEGAAHGACHVRKGKHMCFCYFKCRKAEKMAQDKLKAEELAKEKAEAAKVVTP	107

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Fli1g00136	107	Coils	Coil	82	102	-	-
	Fli1g00136	107	Pfam	Gamma-thionin family	30	78	-	-
	Fli1g00136	107	PANTHER	DEFENSIN-LIKE PROTEIN 1	1	78	-	GO:0006952(PANTHER)
	Fli1g00136	107	Gene3D	-	30	78	IPR036574	-
	Fli1g00136	107	SUPERFAMILY	Scorpion toxin-like	29	78	IPR036574	-
	Fli1g00136	107	SMART	gth-4	30	78	IPR003614	GO:0006952(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Fli1g00136	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Fli	Fli-Chr1:2694622	Fli1g00141	Fli-Chr1:2803774	dispersed
	Fli	Fli-Chr1:2694622	Fli1g00137	Fli-Chr1:2707182	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Fli1g00136	.	1	78	Plant Defensins gene family	AT1G19610	50.0	5.30e-25	88.2
	Fli1g00137	.	1	78	Plant Defensins gene family	AT1G19610	50.0	1.04e-24	87.4
	Fli1g00140	.	4	78	Plant Defensins gene family	AT1G19610	44.0	1.61e-16	67.8
	Fli1g00141	.	7	78	Plant Defensins gene family	AT1G19610	55.556	7.82e-24	85.1
	Fli5g00246	WGDA	1	77	Plant Defensins gene family	AT2G02120	62.821	8.68e-32	103.0
	Fli12g01122	.	2	77	Plant Defensins gene family	AT2G02130	56.25	1.48e-24	85.9
	Fli15g01434	.	12	77	Plant Defensins gene family	AT2G02130	56.716	1.59e-23	83.6
	Fli15g01435	WGDA	3	77	Plant Defensins gene family	AT2G02100	59.211	1.06e-29	98.6