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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00148 ATGGCCGCTATTTTAGCTCGCAAATCGATCTCAGCTATTCGTAATCGACAGCTTGTGTTGGCAGGACAAGTGTTGCAGGGCCATAACAACGGGATAATTTCTGGTGCACGCTCATTTGCAACCAAACACTCATTCTCAACCGATAAAGATGATGAGGAAAGAGAAAAGCTTGCAAAGGAAATCTCAAAAGACTGGAGTTCTGTCTTCGAGCGGAGCATAAATACATTATTTCTAACTGAATTGGTTCGAGGTCTGTCTCTAACACTCAAATACTTCTTTGAGCCAAAAGTTACTATTAATTATCCATTTGAGAAGGGTCCTTTGAGCCCTCGATTTCGAGGAGAACATGCCCTCAGGCGTTATCCAACTGGAGAAGAACGTTGTATTGCCTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCCATCACCATAGAAGCAGAGGAACGTGAAGATGGCAGCCGTAGAACAACAAGGTATGACATTGATATGACAAAGTGTATATACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCAATTGTGGAAGGCCCCAACTTTGAGTTTGCCACCGAAACCCACGAGGAACTCCTGTATGATAAGGAGAAGCTTCTTGAAAACGGTGATCGATGGGAGACCGAGATTGCTGAGAACCTCAGATCCGAGAGTCTTTATCGATGA 684 44.15 MAAILARKSISAIRNRQLVLAGQVLQGHNNGIISGARSFATKHSFSTDKDDEEREKLAKEISKDWSSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 227
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00148 227 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 128 139 IPR017900 -
Fli1g00148 227 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 60 227 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Fli1g00148 227 Gene3D - 101 226 - -
Fli1g00148 227 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 119 148 IPR017896 -
Fli1g00148 227 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 167 178 IPR017900 -
Fli1g00148 227 NCBIfam NADH-quinone oxidoreductase, chain I 84 205 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Fli1g00148 227 SUPERFAMILY 4Fe-4S ferredoxins 101 211 - -
Fli1g00148 227 Pfam 4Fe-4S dicluster domain 127 181 IPR017896 -
Fli1g00148 227 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 75 211 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Fli1g00148 227 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 158 187 IPR017896 -
Fli1g00148 227 FunFam NADH-quinone oxidoreductase subunit I 1 101 224 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00148 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Fli1g00148 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]