AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fli1g00153 ATGGCAGAAAAGCTTATACAAAGGCTTGAAGCGGCCGTATCGCGGCTGGAGTCGTTCTCCCGCGGCTCCCAGCCCCAAGCCGCCGCCGTTGACGCCGGTTCAGCCTCATCGGAGCCGTCGATCGTCGCGTTTGACGATCTGATCACCGAATACGTCGATAAGGTTTCCGATTCAGCGGAGAAGATCGGAGGACAGATTAAGGATATCACGAGTGTTCTCCGGGAGGCTTTTTGCGCTCAGAAGGAGCTTCTCGTTAAGATCAAACGAACGCAGAAACCTGATGCTGGAGGAATGGCGGAATTTCTCAGGCCATTGAATGAAAAATTAACTGAAGCAAGTAGAATGACAGAAGGACCCCGTTCAGATTTTTTTAACCACTTAAGATCTGTTGCTGAAAGTCTAACAACTTTAGCATGGATTGCATATACAGGAAAAAACTGCGGAATGAGCATGCCTATTGCACATGTTGAAGAATGTTGGCAGTCAGCTGAGTTTTACAATAATAAGGTTCTTGTAGAATACAAAAATAAAGATGCAAATCATGTGGAATGGGCAAAAGCTCTCAAGGAACTTTATGTACCAGGGTTAAGGGATTATGTTAAGAGTCACTATCCTTTGGGACCTGTATGGAGTGCAACAGGGGCAACTGTATCTGCTCCATCAAAGTCTTCTCAACCGGGTGCTCCTGCTGCTCCAAATCCCCCACCAGCCTCACTTGCCAGCTCATCATCTTCTTCGTCATCATCCTCATCGCGTCCAAAACAAGGAATGGCTGCTGTTTTTCAAGAAATTAGTTCAAAGCCTGTTACTGCTGGATTAAAAAAAGTTACAGACGATATGAAAACGAAAAACCGCACGGATAGAGCAGGATTTGTGAGTTCTGGTGAAAAAGAACCCCGCAAGAGTGTACCATCAGCTGCTAAAGTTGGTCTGCCAAAACTTGAGCTTGTAATGGGTCGCAAATGGGTTGTTGAGTACCAAATTGGCGTTAAGGATTTGTCGATTGATGATTGTGATCCAAAGCAGACAGTTTATATTTTTGGATGCAAAGATTCAGTTCTTCAGATTAAAGGGAAAGTTAACAACATAACTGTTGATAAATGCACCAAAATGGGTGTTGTATTTACGGATGTTGTCGCTGCTTTTGAGATTGTTAATTGCAGCAGTGTTGAGGTGCAATGTCAGGGTGCAGCCCCTACCATTTCAATAGACAACACAGCAGGCTGCCAACTGTACTTGAGCAAAGAATCTCTAGAATCTTCTATCACAACTTCAAAGGCAAGTGAAGTTAATGTGATGGTACCTGCCCAAGATCCTGATGCTGATCTGGCGGAGCATCCTATGCCACATCAATACATTCACACTTACCAGGATGGCCACTTCGTTACAACCCCCGTCTCCCACACCGGAGGGTAA 1416 45.13 MAEKLIQRLEAAVSRLESFSRGSQPQAAAVDAGSASSEPSIVAFDDLITEYVDKVSDSAEKIGGQIKDITSVLREAFCAQKELLVKIKRTQKPDAGGMAEFLRPLNEKLTEASRMTEGPRSDFFNHLRSVAESLTTLAWIAYTGKNCGMSMPIAHVEECWQSAEFYNNKVLVEYKNKDANHVEWAKALKELYVPGLRDYVKSHYPLGPVWSATGATVSAPSKSSQPGAPAAPNPPPASLASSSSSSSSSSSRPKQGMAAVFQEISSKPVTAGLKKVTDDMKTKNRTDRAGFVSSGEKEPRKSVPSAAKVGLPKLELVMGRKWVVEYQIGVKDLSIDDCDPKQTVYIFGCKDSVLQIKGKVNNITVDKCTKMGVVFTDVVAAFEIVNCSSVEVQCQGAAPTISIDNTAGCQLYLSKESLESSITTSKASEVNVMVPAQDPDADLAEHPMPHQYIHTYQDGHFVTTPVSHTGG 471
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fli1g00153 471 ProSiteProfiles C-CAP-cofactor C-like domain profile. 299 448 IPR017901 -
Fli1g00153 471 MobiDBLite consensus disorder prediction 215 257 - -
Fli1g00153 471 ProSitePatterns CAP protein signature 1. 5 17 IPR018106 -
Fli1g00153 471 MobiDBLite consensus disorder prediction 237 256 - -
Fli1g00153 471 FunFam Adenylyl cyclase-associated protein 310 470 - -
Fli1g00153 471 MobiDBLite consensus disorder prediction 272 304 - -
Fli1g00153 471 MobiDBLite consensus disorder prediction 274 295 - -
Fli1g00153 471 Pfam Adenylate cyclase associated (CAP) C terminal 312 468 IPR013912 GO:0003779(InterPro)|GO:0007010(InterPro)
Fli1g00153 471 Gene3D - 40 215 IPR036222 -
Fli1g00153 471 SUPERFAMILY N-terminal domain of adenylylcyclase associated protein, CAP 40 235 IPR036222 -
Fli1g00153 471 SMART carp 349 386 IPR006599 -
Fli1g00153 471 SMART carp 387 424 IPR006599 -
Fli1g00153 471 Gene3D - 312 470 IPR016098 -
Fli1g00153 471 FunFam Adenylyl cyclase-associated protein 40 215 - -
Fli1g00153 471 SUPERFAMILY C-terminal domain of adenylylcyclase associated protein 317 470 IPR036223 -
Fli1g00153 471 Pfam CAP, N-terminal domain 44 206 IPR053950 -
Fli1g00153 471 PANTHER ADENYLYL CYCLASE-ASSOCIATED PROTEIN 3 469 IPR001837 GO:0003779(PANTHER)|GO:0003779(InterPro)|GO:0005737(PANTHER)|GO:0007010(InterPro)|GO:0007015(PANTHER)|GO:0008179(PANTHER)|GO:0019933(PANTHER)
Fli1g00153 471 Pfam CAP N-terminal conserved motif 3 35 IPR013992 GO:0003779(InterPro)|GO:0007010(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fli1g00153 K17261 adenylyl cyclase-associated protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fli Fli-Chr14:63817346 Fli1g00153 Fli-Chr1:3067306 dispersed
Fli Fli-Chr14:63902063 Fli1g00153 Fli-Chr1:3067306 dispersed
Fli Fli-Chr10:17444041 Fli1g00153 Fli-Chr1:3067306 transposed
Fli Fli-Chr1:3067306 Fli10g00894 Fli-Chr10:17439443 wgd